RNA–Protein interactions for RNA: ENST00000361198.9

LDB1-201, Transcript of LIM domain binding 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LDB1, Length 2,285 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB1-201ENST00000361198 NCAPD2Q15021 1401 aa28.16■■■□□ 2.1
LDB1-201ENST00000361198 MST1RQ04912 1400 aa28.15■■■□□ 2.1
LDB1-201ENST00000361198 AKAP4Q5JQC9 854 aa28.15■■■□□ 2.1
LDB1-201ENST00000361198 SLKQ9H2G2 1235 aaPredicted RBP28.14■■■□□ 2.1
LDB1-201ENST00000361198 LMO7Q8WWI1 1683 aa28.13■■■□□ 2.09
LDB1-201ENST00000361198 DDX17Q92841 729 aaKnown RBP28.13■■■□□ 2.09
LDB1-201ENST00000361198 AMOTQ4VCS5 1084 aa28.13■■■□□ 2.09
LDB1-201ENST00000361198 HDGFL1Q5TGJ6 251 aa28.13■■■□□ 2.09
LDB1-201ENST00000361198 ALS2Q96Q42 1657 aa28.13■■■□□ 2.09
LDB1-201ENST00000361198 MPRIPQ6WCQ1 1025 aa28.12■■■□□ 2.09
LDB1-201ENST00000361198 PLEKHM2Q8IWE5 1019 aa28.12■■■□□ 2.09
LDB1-201ENST00000361198 EIF4A1P60842 406 aaKnown RBP28.12■■■□□ 2.09
LDB1-201ENST00000361198 ZC3H6P61129 1189 aaKnown RBP28.11■■■□□ 2.09
LDB1-201ENST00000361198 PXDNQ92626 1479 aa28.11■■■□□ 2.09
LDB1-201ENST00000361198 RGPD5Q99666 1765 aa28.11■■■□□ 2.09
LDB1-201ENST00000361198 TEFQ10587 303 aa28.1■■■□□ 2.09
LDB1-201ENST00000361198 C16orf71Q8IYS4 520 aaPredicted RBP28.1■■■□□ 2.09
LDB1-201ENST00000361198 KDM3BQ7LBC6 1761 aa28.1■■■□□ 2.09
LDB1-201ENST00000361198 KCNQ3O43525 872 aa28.09■■■□□ 2.09
LDB1-201ENST00000361198 DCCP43146 1447 aa28.08■■■□□ 2.09
LDB1-201ENST00000361198 CAMTA1Q9Y6Y1 1673 aa28.08■■■□□ 2.09
LDB1-201ENST00000361198 HSPA2P54652 639 aa28.08■■■□□ 2.09
LDB1-201ENST00000361198 C1orf141Q5JVX7 400 aa28.08■■■□□ 2.09
LDB1-201ENST00000361198 PHAXQ9H814 394 aaKnown RBP28.08■■■□□ 2.09
LDB1-201ENST00000361198 BTBD11A6QL63 1104 aa28.07■■■□□ 2.08
LDB1-201ENST00000361198 GNAI2P04899 355 aa28.07■■■□□ 2.08
LDB1-201ENST00000361198 GSPT1P15170 499 aaKnown RBP28.07■■■□□ 2.08
LDB1-201ENST00000361198 EIF2S2P20042 333 aaKnown RBP28.07■■■□□ 2.08
LDB1-201ENST00000361198 ERBB3P21860 1342 aa28.07■■■□□ 2.08
LDB1-201ENST00000361198 APBB1O00213 710 aa28.07■■■□□ 2.08
LDB1-201ENST00000361198 RNMTO43148 476 aaKnown RBP28.07■■■□□ 2.08
LDB1-201ENST00000361198 HMMRO75330 724 aa28.07■■■□□ 2.08
LDB1-201ENST00000361198 SMARCA5O60264 1052 aaPredicted RBP28.06■■■□□ 2.08
LDB1-201ENST00000361198 TBC1D9Q6ZT07 1266 aa28.06■■■□□ 2.08
LDB1-201ENST00000361198 NCOA3Q9Y6Q9 1424 aa28.06■■■□□ 2.08
LDB1-201ENST00000361198 OTUD7AQ8TE49 926 aaPredicted RBP28.06■■■□□ 2.08
LDB1-201ENST00000361198 BRPF3Q9ULD4 1205 aa28.05■■■□□ 2.08
LDB1-201ENST00000361198 HOXB7P09629 217 aa28.04■■■□□ 2.08
LDB1-201ENST00000361198 RBM25P49756 843 aaKnown RBP28.04■■■□□ 2.08
LDB1-201ENST00000361198 GNAI3P08754 354 aa28.03■■■□□ 2.08
LDB1-201ENST00000361198 CADPS2Q86UW7 1296 aa28.03■■■□□ 2.08
LDB1-201ENST00000361198 TTC22Q5TAA0 569 aa28.02■■■□□ 2.08
LDB1-201ENST00000361198 PXDNLA1KZ92 1463 aa28.02■■■□□ 2.08
LDB1-201ENST00000361198 N4BP2Q86UW6 1770 aaPredicted RBP28.01■■■□□ 2.08
LDB1-201ENST00000361198 CHPF2Q9P2E5 772 aa28.01■■■□□ 2.07
LDB1-201ENST00000361198 NPHP3Q7Z494 1330 aa28■■■□□ 2.07
LDB1-201ENST00000361198 CDC45O75419 566 aa27.99■■■□□ 2.07
LDB1-201ENST00000361198 CABLES1Q8TDN4 633 aa27.99■■■□□ 2.07
LDB1-201ENST00000361198 USP44Q9H0E7 712 aa27.99■■■□□ 2.07
LDB1-201ENST00000361198 OVOS2A0A0G2JMS6 1433 aa27.99■■■□□ 2.07
LDB1-201ENST00000361198 PNMA6EA0A0J9YXQ4 647 aa27.98■■■□□ 2.07
LDB1-201ENST00000361198 EXOC6BQ9Y2D4 811 aa27.97■■■□□ 2.07
LDB1-201ENST00000361198 LRRFIP2Q9Y608 721 aaKnown RBP27.97■■■□□ 2.07
LDB1-201ENST00000361198 ATP8B2P98198 1209 aa27.97■■■□□ 2.07
LDB1-201ENST00000361198 NLRP2Q9NX02 1062 aa27.97■■■□□ 2.07
LDB1-201ENST00000361198 CHMP4AQ9BY43 222 aa27.96■■■□□ 2.07
LDB1-201ENST00000361198 ANXA1P04083 346 aa27.95■■■□□ 2.07
LDB1-201ENST00000361198 TNS3Q68CZ2 1445 aa27.95■■■□□ 2.06
LDB1-201ENST00000361198 CHMP5Q9NZZ3 219 aa27.95■■■□□ 2.06
LDB1-201ENST00000361198 RAPGEF4Q8WZA2 1011 aa27.94■■■□□ 2.06
LDB1-201ENST00000361198 COL18A1P39060 1754 aa27.94■■■□□ 2.06
LDB1-201ENST00000361198 GIGYF1O75420 1035 aaPredicted RBP27.93■■■□□ 2.06
LDB1-201ENST00000361198 UBTFL1P0CB47 393 aaPredicted RBP27.93■■■□□ 2.06
LDB1-201ENST00000361198 SRCIN1Q9C0H9 1055 aa27.93■■■□□ 2.06
LDB1-201ENST00000361198 PI4KAP2A4QPH2 592 aa27.93■■■□□ 2.06
LDB1-201ENST00000361198 PI4KAP1Q8N8J0 262 aa27.93■■■□□ 2.06
LDB1-201ENST00000361198 HEG1Q9ULI3 1381 aa27.92■■■□□ 2.06
LDB1-201ENST00000361198 SIPA1L3O60292 1781 aaPredicted RBP27.92■■■□□ 2.06
LDB1-201ENST00000361198 SNX21Q969T3 373 aa27.92■■■□□ 2.06
LDB1-201ENST00000361198 SDSP20132 328 aa27.92■■■□□ 2.06
LDB1-201ENST00000361198 CHRNA2Q15822 529 aa27.92■■■□□ 2.06
LDB1-201ENST00000361198 SPRYD3Q8NCJ5 442 aa27.92■■■□□ 2.06
LDB1-201ENST00000361198 KIF2CQ99661 725 aa27.92■■■□□ 2.06
LDB1-201ENST00000361198 SPATA31A3Q5VYP0 1347 aa27.91■■■□□ 2.06
LDB1-201ENST00000361198 ADAMTS7Q9UKP4 1686 aa27.91■■■□□ 2.06
LDB1-201ENST00000361198 DNAAF4Q8WXU2 420 aa27.91■■■□□ 2.06
LDB1-201ENST00000361198 RTN4Q9NQC3 1192 aaKnown RBP27.91■■■□□ 2.06
LDB1-201ENST00000361198 LMTK3Q96Q04 1460 aa27.91■■■□□ 2.06
LDB1-201ENST00000361198 CRYBG1Q9Y4K1 1723 aa27.91■■■□□ 2.06
LDB1-201ENST00000361198 XIRP1Q702N8 1843 aaKnown RBP27.91■■■□□ 2.06
LDB1-201ENST00000361198 HSCBQ8IWL3 235 aa27.9■■■□□ 2.06
LDB1-201ENST00000361198 DBF4Q9UBU7 674 aaPredicted RBP27.9■■■□□ 2.06
LDB1-201ENST00000361198 PRAMEF22A3QJZ6 481 aa27.9■■■□□ 2.06
LDB1-201ENST00000361198 MCM4P33991 863 aa27.9■■■□□ 2.06
LDB1-201ENST00000361198 BEND3Q5T5X7 828 aa27.89■■■□□ 2.06
LDB1-201ENST00000361198 CSB-PGBD3P0DP91 1061 aa27.89■■■□□ 2.05
LDB1-201ENST00000361198 LRRCC1Q9C099 1032 aa27.89■■■□□ 2.05
LDB1-201ENST00000361198 OSBPL3Q9H4L5 887 aa27.89■■■□□ 2.05
LDB1-201ENST00000361198 TATP17735 454 aaPredicted RBP27.88■■■□□ 2.05
LDB1-201ENST00000361198 PDE1AP54750 535 aa27.88■■■□□ 2.05
LDB1-201ENST00000361198 ADCY9O60503 1353 aa27.88■■■□□ 2.05
LDB1-201ENST00000361198 IBTKQ9P2D0 1353 aaPredicted RBP27.88■■■□□ 2.05
LDB1-201ENST00000361198 MEGF6O75095 1541 aa27.87■■■□□ 2.05
LDB1-201ENST00000361198 PROSER3Q2NL68 480 aa27.87■■■□□ 2.05
LDB1-201ENST00000361198 NBPF7P0C2Y1 421 aaPredicted RBP27.87■■■□□ 2.05
LDB1-201ENST00000361198 DDIT3P35638 169 aa27.87■■■□□ 2.05
LDB1-201ENST00000361198 BRINP3Q76B58 766 aa27.86■■■□□ 2.05
LDB1-201ENST00000361198 KDM6AO15550 1401 aaPredicted RBP27.86■■■□□ 2.05
LDB1-201ENST00000361198 SALL3Q9BXA9 1300 aa27.85■■■□□ 2.05
LDB1-201ENST00000361198 PHKG2P15735 406 aa27.85■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 230.8 ms