RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 KLHL34Q8N239 644 aa20.68■□□□□ 0.9
VAPA-201ENST00000340541 DCAF5Q96JK2 942 aa20.68■□□□□ 0.9
VAPA-201ENST00000340541 TAF1LQ8IZX4 1826 aa20.67■□□□□ 0.9
VAPA-201ENST00000340541 GRIN3BO60391 1043 aa20.67■□□□□ 0.9
VAPA-201ENST00000340541 HSP90AB1P08238 724 aaKnown RBP20.67■□□□□ 0.9
VAPA-201ENST00000340541 SCN11AQ9UI33 1791 aa20.67■□□□□ 0.9
VAPA-201ENST00000340541 TMOD3Q9NYL9 352 aa20.66■□□□□ 0.9
VAPA-201ENST00000340541 CD2APQ9Y5K6 639 aa20.66■□□□□ 0.9
VAPA-201ENST00000340541 ADAMTS7Q9UKP4 1686 aa20.65■□□□□ 0.9
VAPA-201ENST00000340541 ERVV-2B6SEH9 535 aa20.65■□□□□ 0.9
VAPA-201ENST00000340541 RALBP1Q15311 655 aa20.65■□□□□ 0.9
VAPA-201ENST00000340541 MTHFSDQ2M296 383 aaKnown RBP20.65■□□□□ 0.9
VAPA-201ENST00000340541 C1orf141Q5JVX7 400 aa20.65■□□□□ 0.9
VAPA-201ENST00000340541 NLGN2Q8NFZ4 835 aa20.65■□□□□ 0.9
VAPA-201ENST00000340541 AK7Q96M32 723 aa20.65■□□□□ 0.9
VAPA-201ENST00000340541 LOC102724428A0A0B4J2F2 783 aa20.64■□□□□ 0.89
VAPA-201ENST00000340541 SIK1P57059 783 aa20.64■□□□□ 0.89
VAPA-201ENST00000340541 AKAP4Q5JQC9 854 aa20.64■□□□□ 0.89
VAPA-201ENST00000340541 RSPH6AQ9H0K4 717 aa20.64■□□□□ 0.89
VAPA-201ENST00000340541 VIRMAQ69YN4 1812 aaKnown RBP20.64■□□□□ 0.89
VAPA-201ENST00000340541 ASAP1Q9ULH1 1129 aa20.63■□□□□ 0.89
VAPA-201ENST00000340541 NUDCQ9Y266 331 aa20.63■□□□□ 0.89
VAPA-201ENST00000340541 C4BP0C0L5 1744 aa20.62■□□□□ 0.89
VAPA-201ENST00000340541 SSFA2P28290 1259 aa20.62■□□□□ 0.89
VAPA-201ENST00000340541 PELP1Q8IZL8 1130 aaKnown RBP20.62■□□□□ 0.89
VAPA-201ENST00000340541 ATG3Q9NT62 314 aa20.62■□□□□ 0.89
VAPA-201ENST00000340541 MSL1Q68DK7 614 aa20.61■□□□□ 0.89
VAPA-201ENST00000340541 PHACTR3Q96KR7 559 aa20.61■□□□□ 0.89
VAPA-201ENST00000340541 U2AF1L5P0DN76 240 aaPredicted RBP20.6■□□□□ 0.89
VAPA-201ENST00000340541 PRKAR2BP31323 418 aa20.6■□□□□ 0.89
VAPA-201ENST00000340541 U2AF1Q01081 240 aaKnown RBP eCLIP20.6■□□□□ 0.891e-9■■■□□ 16.4
VAPA-201ENST00000340541 LGR6Q9HBX8 967 aa20.6■□□□□ 0.89
VAPA-201ENST00000340541 MRC1P22897 1456 aa20.6■□□□□ 0.89
VAPA-201ENST00000340541 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.59■□□□□ 0.89
VAPA-201ENST00000340541 CABP4P57796 275 aa20.59■□□□□ 0.89
VAPA-201ENST00000340541 ZNF316A6NFI3 1004 aaPredicted RBP20.58■□□□□ 0.89
VAPA-201ENST00000340541 FCHSD2O94868 740 aa20.58■□□□□ 0.89
VAPA-201ENST00000340541 NFATC2IPQ8NCF5 419 aa20.58■□□□□ 0.89
VAPA-201ENST00000340541 UBR3Q6ZT12 1888 aa20.58■□□□□ 0.88
VAPA-201ENST00000340541 MYBBP1AQ9BQG0 1328 aaKnown RBP20.57■□□□□ 0.88
VAPA-201ENST00000340541 RNMTO43148 476 aaKnown RBP20.57■□□□□ 0.88
VAPA-201ENST00000340541 YBX3P16989 372 aaKnown RBP eCLIP20.57■□□□□ 0.882e-8■■■□□ 16.6
VAPA-201ENST00000340541 ATP6V1AP38606 617 aa20.57■□□□□ 0.88
VAPA-201ENST00000340541 C1QTNF8P60827 252 aa20.57■□□□□ 0.88
VAPA-201ENST00000340541 LINC00116Q8NCU8 138 aa20.57■□□□□ 0.88
VAPA-201ENST00000340541 ZNF831Q5JPB2 1677 aa20.57■□□□□ 0.88
VAPA-201ENST00000340541 GAS2L2Q8NHY3 880 aa20.56■□□□□ 0.88
VAPA-201ENST00000340541 GOLGB1Q14789 3259 aaKnown RBP20.56■□□□□ 0.88
VAPA-201ENST00000340541 ITPK1Q13572 414 aa20.55■□□□□ 0.88
VAPA-201ENST00000340541 AMIGO3Q86WK7 504 aa20.55■□□□□ 0.88
VAPA-201ENST00000340541 SLC4A9Q96Q91 983 aa20.55■□□□□ 0.88
VAPA-201ENST00000340541 PRKRIP1Q9H875 184 aaPredicted RBP20.55■□□□□ 0.88
VAPA-201ENST00000340541 SLC52A2Q9HAB3 445 aa20.55■□□□□ 0.88
VAPA-201ENST00000340541 PHF14O94880 888 aa20.54■□□□□ 0.88
VAPA-201ENST00000340541 GNPATO15228 680 aa20.53■□□□□ 0.88
VAPA-201ENST00000340541 RC3H1Q5TC82 1133 aaKnown RBP20.53■□□□□ 0.88
VAPA-201ENST00000340541 IL17REQ8NFR9 667 aa20.53■□□□□ 0.88
VAPA-201ENST00000340541 SIPA1L3O60292 1781 aaPredicted RBP20.52■□□□□ 0.88
VAPA-201ENST00000340541 GNAT3A8MTJ3 354 aa20.52■□□□□ 0.88
VAPA-201ENST00000340541 COL5A3P25940 1745 aaPredicted RBP20.52■□□□□ 0.88
VAPA-201ENST00000340541 PLEKHF1Q96S99 279 aa20.51■□□□□ 0.87
VAPA-201ENST00000340541 CICQ96RK0 1608 aaPredicted RBP20.51■□□□□ 0.87
VAPA-201ENST00000340541 CEMIPQ8WUJ3 1361 aa20.5■□□□□ 0.87
VAPA-201ENST00000340541 GIGYF1O75420 1035 aaPredicted RBP20.5■□□□□ 0.87
VAPA-201ENST00000340541 ADRA2BP18089 450 aa20.5■□□□□ 0.87
VAPA-201ENST00000340541 TRAPPC3LQ5T215 181 aa20.5■□□□□ 0.87
VAPA-201ENST00000340541 RTCBQ9Y3I0 505 aaKnown RBP20.5■□□□□ 0.87
VAPA-201ENST00000340541 SMIM5Q71RC9 77 aa20.49■□□□□ 0.87
VAPA-201ENST00000340541 NLGN1Q8N2Q7 840 aa20.49■□□□□ 0.87
VAPA-201ENST00000340541 RBM42Q9BTD8 480 aaKnown RBP20.49■□□□□ 0.87
VAPA-201ENST00000340541 TJP1Q07157 1748 aa20.49■□□□□ 0.87
VAPA-201ENST00000340541 UBR2Q8IWV8 1755 aa20.48■□□□□ 0.87
VAPA-201ENST00000340541 KCPQ6ZWJ8 1503 aa20.48■□□□□ 0.87
VAPA-201ENST00000340541 DLG5Q8TDM6 1919 aa20.47■□□□□ 0.87
VAPA-201ENST00000340541 PTCD1O75127 700 aaKnown RBP20.47■□□□□ 0.87
VAPA-201ENST00000340541 CNTNAP4Q9C0A0 1308 aa20.47■□□□□ 0.87
VAPA-201ENST00000340541 RPS6KA4O75676 772 aa20.46■□□□□ 0.87
VAPA-201ENST00000340541 SLC39A6Q13433 755 aa20.46■□□□□ 0.87
VAPA-201ENST00000340541 MYH14Q7Z406 1995 aaKnown RBP20.46■□□□□ 0.87
VAPA-201ENST00000340541 SENP3-EIF4A1A0A087X0R7 540 aa20.44■□□□□ 0.86
VAPA-201ENST00000340541 MMP10P09238 476 aa20.44■□□□□ 0.86
VAPA-201ENST00000340541 TGFB2P61812 414 aa20.44■□□□□ 0.86
VAPA-201ENST00000340541 ARHGEF1Q92888 912 aaKnown RBP20.44■□□□□ 0.86
VAPA-201ENST00000340541 TEFQ10587 303 aa20.43■□□□□ 0.86
VAPA-201ENST00000340541 MCM10Q7L590 875 aa20.43■□□□□ 0.86
VAPA-201ENST00000340541 HTATSF1O43719 755 aaKnown RBP20.42■□□□□ 0.86
VAPA-201ENST00000340541 RFC4P35249 363 aa20.42■□□□□ 0.86
VAPA-201ENST00000340541 DCTN1Q14203 1278 aa20.41■□□□□ 0.86
VAPA-201ENST00000340541 NFE2L2Q16236 605 aa20.41■□□□□ 0.86
VAPA-201ENST00000340541 PNNQ9H307 717 aaKnown RBP20.41■□□□□ 0.86
VAPA-201ENST00000340541 ADCY9O60503 1353 aa20.4■□□□□ 0.86
VAPA-201ENST00000340541 GYS1P13807 737 aa20.4■□□□□ 0.86
VAPA-201ENST00000340541 RTF1Q92541 710 aaKnown RBP20.4■□□□□ 0.86
VAPA-201ENST00000340541 ATP10DQ9P241 1426 aa20.4■□□□□ 0.86
VAPA-201ENST00000340541 NEFMP07197 916 aa20.39■□□□□ 0.85
VAPA-201ENST00000340541 ZNF790Q6PG37 636 aa20.39■□□□□ 0.85
VAPA-201ENST00000340541 DNAJC10Q8IXB1 793 aa20.39■□□□□ 0.85
VAPA-201ENST00000340541 GPBP1L1Q9HC44 474 aaPredicted RBP20.39■□□□□ 0.85
VAPA-201ENST00000340541 CCDC87Q9NVE4 849 aa20.39■□□□□ 0.85
VAPA-201ENST00000340541 KIF13BQ9NQT8 1826 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms