RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 N4BP2Q86UW6 1770 aaPredicted RBP23.31■■□□□ 1.32
RTN4-201ENST00000317610 SSH2Q76I76 1423 aa23.31■■□□□ 1.32
RTN4-201ENST00000317610 XRN1Q8IZH2 1706 aaKnown RBP23.31■■□□□ 1.32
RTN4-201ENST00000317610 ROBO2Q9HCK4 1378 aa23.3■■□□□ 1.32
RTN4-201ENST00000317610 ACEP12821 1306 aa23.3■■□□□ 1.32
RTN4-201ENST00000317610 FAM208AQ9UK61 1670 aaKnown RBP23.3■■□□□ 1.32
RTN4-201ENST00000317610 F6X3S4 739 aa23.3■■□□□ 1.32
RTN4-201ENST00000317610 INTS4Q96HW7 963 aaKnown RBP23.3■■□□□ 1.32
RTN4-201ENST00000317610 EIF2AK3Q9NZJ5 1116 aaKnown RBP23.3■■□□□ 1.32
RTN4-201ENST00000317610 LRRC37A3O60309 1634 aa23.29■■□□□ 1.32
RTN4-201ENST00000317610 HDGFP51858 240 aaKnown RBP23.29■■□□□ 1.32
RTN4-201ENST00000317610 TSPYL4Q9UJ04 414 aa23.29■■□□□ 1.32
RTN4-201ENST00000317610 DIP2BQ9P265 1576 aa23.29■■□□□ 1.32
RTN4-201ENST00000317610 SLC4A10Q6U841 1118 aa23.28■■□□□ 1.32
RTN4-201ENST00000317610 KDRP35968 1356 aa23.28■■□□□ 1.32
RTN4-201ENST00000317610 RIMS1Q86UR5 1692 aaKnown RBP23.28■■□□□ 1.32
RTN4-201ENST00000317610 MAP3K19Q56UN5 1328 aa23.28■■□□□ 1.32
RTN4-201ENST00000317610 MCCP23508 829 aa23.28■■□□□ 1.32
RTN4-201ENST00000317610 LRRCC1Q9C099 1032 aa23.28■■□□□ 1.32
RTN4-201ENST00000317610 MIS18AQ9NYP9 233 aa23.28■■□□□ 1.32
RTN4-201ENST00000317610 NSFL1CQ9UNZ2 370 aaKnown RBP23.28■■□□□ 1.32
RTN4-201ENST00000317610 MTHFSDQ2M296 383 aaKnown RBP23.27■■□□□ 1.32
RTN4-201ENST00000317610 STAP2Q9UGK3 403 aa23.27■■□□□ 1.32
RTN4-201ENST00000317610 EXOC6BQ9Y2D4 811 aa23.27■■□□□ 1.32
RTN4-201ENST00000317610 MX1P20591 662 aa23.27■■□□□ 1.32
RTN4-201ENST00000317610 CACNA1FO60840 1977 aa23.26■■□□□ 1.31
RTN4-201ENST00000317610 CHMLP26374 656 aa23.26■■□□□ 1.31
RTN4-201ENST00000317610 CHAMP1Q96JM3 812 aa23.26■■□□□ 1.31
RTN4-201ENST00000317610 MCM5P33992 734 aa23.26■■□□□ 1.31
RTN4-201ENST00000317610 RTF1Q92541 710 aaKnown RBP23.26■■□□□ 1.31
RTN4-201ENST00000317610 SYCE3A1L190 88 aa23.25■■□□□ 1.31
RTN4-201ENST00000317610 FOXO3O43524 673 aa23.25■■□□□ 1.31
RTN4-201ENST00000317610 GNAI3P08754 354 aa23.25■■□□□ 1.31
RTN4-201ENST00000317610 ATP8B2P98198 1209 aa23.25■■□□□ 1.31
RTN4-201ENST00000317610 PALD1Q9ULE6 856 aa23.25■■□□□ 1.31
RTN4-201ENST00000317610 EPB41L2O43491 1005 aaKnown RBP23.25■■□□□ 1.31
RTN4-201ENST00000317610 ZKSCAN5Q9Y2L8 839 aa23.25■■□□□ 1.31
RTN4-201ENST00000317610 ADAMTS13Q76LX8 1427 aa23.24■■□□□ 1.31
RTN4-201ENST00000317610 SRCIN1Q9C0H9 1055 aa23.24■■□□□ 1.31
RTN4-201ENST00000317610 AOX1Q06278 1338 aa23.24■■□□□ 1.31
RTN4-201ENST00000317610 TSHZ3Q63HK5 1081 aa23.24■■□□□ 1.31
RTN4-201ENST00000317610 STK31Q9BXU1 1019 aa23.23■■□□□ 1.31
RTN4-201ENST00000317610 UBR1Q8IWV7 1749 aa23.23■■□□□ 1.31
RTN4-201ENST00000317610 SBNO1A3KN83 1393 aa23.23■■□□□ 1.31
RTN4-201ENST00000317610 PXDNLA1KZ92 1463 aa23.22■■□□□ 1.31
RTN4-201ENST00000317610 TSPOAP1O95153 1857 aa23.22■■□□□ 1.31
RTN4-201ENST00000317610 PNMA6EA0A0J9YXQ4 647 aa23.22■■□□□ 1.31
RTN4-201ENST00000317610 HTATSF1O43719 755 aaKnown RBP23.22■■□□□ 1.31
RTN4-201ENST00000317610 FLT4P35916 1363 aa23.22■■□□□ 1.31
RTN4-201ENST00000317610 TMEM2Q9UHN6 1383 aa23.22■■□□□ 1.31
RTN4-201ENST00000317610 FAM69CQ0P6D2 419 aa23.21■■□□□ 1.31
RTN4-201ENST00000317610 FLIIQ13045 1269 aa23.21■■□□□ 1.31
RTN4-201ENST00000317610 PDCL3Q9H2J4 239 aa23.21■■□□□ 1.31
RTN4-201ENST00000317610 CEP170BQ9Y4F5 1589 aaPredicted RBP23.21■■□□□ 1.31
RTN4-201ENST00000317610 IGSF1Q8N6C5 1336 aa23.21■■□□□ 1.31
RTN4-201ENST00000317610 TTC21AQ8NDW8 1320 aa23.21■■□□□ 1.31
RTN4-201ENST00000317610 SOS1Q07889 1333 aaPredicted RBP23.2■■□□□ 1.3
RTN4-201ENST00000317610 CCDC39Q9UFE4 941 aa23.2■■□□□ 1.3
RTN4-201ENST00000317610 MLECQ14165 292 aa23.2■■□□□ 1.3
RTN4-201ENST00000317610 FOXD4L5Q5VV16 416 aaPredicted RBP23.2■■□□□ 1.3
RTN4-201ENST00000317610 CCDC30Q5VVM6 783 aa23.2■■□□□ 1.3
RTN4-201ENST00000317610 FOXD4L4Q8WXT5 416 aaPredicted RBP23.2■■□□□ 1.3
RTN4-201ENST00000317610 ANO2Q9NQ90 1003 aa23.2■■□□□ 1.3
RTN4-201ENST00000317610 RILPL2Q969X0 211 aa23.17■■□□□ 1.3
RTN4-201ENST00000317610 SYAP1Q96A49 352 aaPredicted RBP23.17■■□□□ 1.3
RTN4-201ENST00000317610 TRIM6-TRIM34B2RNG4 842 aa23.17■■□□□ 1.3
RTN4-201ENST00000317610 PLEKHG5O94827 1062 aa23.17■■□□□ 1.3
RTN4-201ENST00000317610 FKBP5Q13451 457 aaPredicted RBP23.17■■□□□ 1.3
RTN4-201ENST00000317610 CSPP1Q1MSJ5 1256 aa23.17■■□□□ 1.3
RTN4-201ENST00000317610 TNRQ92752 1358 aa23.17■■□□□ 1.3
RTN4-201ENST00000317610 PTPRUQ92729 1446 aa23.16■■□□□ 1.3
RTN4-201ENST00000317610 TSPY26PQ9H489 355 aa23.16■■□□□ 1.3
RTN4-201ENST00000317610 UNC5CLQ8IV45 518 aa23.16■■□□□ 1.3
RTN4-201ENST00000317610 EYA1Q99502 592 aa23.16■■□□□ 1.3
RTN4-201ENST00000317610 HSPA4P34932 840 aa23.15■■□□□ 1.3
RTN4-201ENST00000317610 XPCQ01831 940 aaPredicted RBP23.15■■□□□ 1.3
RTN4-201ENST00000317610 R3HCC1Q9Y3T6 440 aaKnown RBP23.15■■□□□ 1.3
RTN4-201ENST00000317610 LRRFIP2Q9Y608 721 aaKnown RBP23.15■■□□□ 1.3
RTN4-201ENST00000317610 WDR33Q9C0J8 1336 aaKnown RBP23.14■■□□□ 1.3
RTN4-201ENST00000317610 TMEM87AQ8NBN3 555 aa23.14■■□□□ 1.29
RTN4-201ENST00000317610 PLEKHG1Q9ULL1 1385 aa23.13■■□□□ 1.29
RTN4-201ENST00000317610 SSH3Q8TE77 659 aa23.13■■□□□ 1.29
RTN4-201ENST00000317610 BABAM1Q9NWV8 329 aa23.13■■□□□ 1.29
RTN4-201ENST00000317610 PHF14O94880 888 aa23.13■■□□□ 1.29
RTN4-201ENST00000317610 USP44Q9H0E7 712 aa23.13■■□□□ 1.29
RTN4-201ENST00000317610 SOX12O15370 315 aa23.12■■□□□ 1.29
RTN4-201ENST00000317610 UPF3BQ9BZI7 483 aaKnown RBP23.12■■□□□ 1.29
RTN4-201ENST00000317610 RNF214Q8ND24 703 aa23.11■■□□□ 1.29
RTN4-201ENST00000317610 IL25Q9H293 177 aa23.11■■□□□ 1.29
RTN4-201ENST00000317610 PIK3C2AO00443 1686 aa23.11■■□□□ 1.29
RTN4-201ENST00000317610 NUTM2FA1L443 756 aa23.11■■□□□ 1.29
RTN4-201ENST00000317610 RAB11FIP3O75154 756 aa23.11■■□□□ 1.29
RTN4-201ENST00000317610 NOL8Q76FK4 1167 aaKnown RBP23.11■■□□□ 1.29
RTN4-201ENST00000317610 RPAP1Q9BWH6 1393 aaPredicted RBP23.11■■□□□ 1.29
RTN4-201ENST00000317610 GNAT3A8MTJ3 354 aa23.1■■□□□ 1.29
RTN4-201ENST00000317610 VSIG10Q8N0Z9 540 aa23.1■■□□□ 1.29
RTN4-201ENST00000317610 NWD1Q149M9 1564 aa23.1■■□□□ 1.29
RTN4-201ENST00000317610 CRYBG1Q9Y4K1 1723 aa23.1■■□□□ 1.29
RTN4-201ENST00000317610 USP48Q86UV5 1035 aa23.1■■□□□ 1.29
RTN4-201ENST00000317610 TCHHQ07283 1943 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms