RNA–Protein interactions for RNA: ENST00000293441.5

SHANK1-201, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SHANK1, Length 6,643 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-201ENST00000293441 WASF1Q92558 559 aa20.34■□□□□ 0.85
SHANK1-201ENST00000293441 IFIT5Q13325 482 aaKnown RBP20.34■□□□□ 0.85
SHANK1-201ENST00000293441 ERCC4Q92889 916 aaPredicted RBP20.33■□□□□ 0.85
SHANK1-201ENST00000293441 WASLO00401 505 aaPredicted RBP20.33■□□□□ 0.85
SHANK1-201ENST00000293441 KRT28Q7Z3Y7 464 aa20.33■□□□□ 0.85
SHANK1-201ENST00000293441 CEP57L1Q8IYX8 460 aa20.33■□□□□ 0.85
SHANK1-201ENST00000293441 ZNF287Q9HBT7 754 aa20.33■□□□□ 0.84
SHANK1-201ENST00000293441 SEC63Q9UGP8 760 aaKnown RBP20.33■□□□□ 0.84
SHANK1-201ENST00000293441 CHMP4BP1P59074 171 aa20.33■□□□□ 0.84
SHANK1-201ENST00000293441 RAB11FIP3O75154 756 aa20.32■□□□□ 0.84
SHANK1-201ENST00000293441 NOM1Q5C9Z4 860 aaKnown RBP20.32■□□□□ 0.84
SHANK1-201ENST00000293441 EXOC5O00471 708 aa20.32■□□□□ 0.84
SHANK1-201ENST00000293441 F6X3S4 739 aa20.32■□□□□ 0.84
SHANK1-201ENST00000293441 CFAP45Q9UL16 551 aa20.32■□□□□ 0.84
SHANK1-201ENST00000293441 GPTP24298 496 aa20.32■□□□□ 0.84
SHANK1-201ENST00000293441 CUL7Q14999 1698 aa20.31■□□□□ 0.84
SHANK1-201ENST00000293441 LUC7LQ9NQ29 371 aaKnown RBP20.31■□□□□ 0.84
SHANK1-201ENST00000293441 MX1P20591 662 aa20.31■□□□□ 0.84
SHANK1-201ENST00000293441 SLC5A1P13866 664 aa20.3■□□□□ 0.84
SHANK1-201ENST00000293441 MPNDQ8N594 471 aa20.3■□□□□ 0.84
SHANK1-201ENST00000293441 ADGRF5Q8IZF2 1346 aa20.3■□□□□ 0.84
SHANK1-201ENST00000293441 NAPBQ9H115 298 aa20.3■□□□□ 0.84
SHANK1-201ENST00000293441 U3KPZ7 1027 aaPredicted RBP20.3■□□□□ 0.84
SHANK1-201ENST00000293441 TTLL12Q14166 644 aaPredicted RBP20.3■□□□□ 0.84
SHANK1-201ENST00000293441 CCDC8Q9H0W5 538 aaPredicted RBP20.3■□□□□ 0.84
SHANK1-201ENST00000293441 NAIPQ13075 1403 aa20.3■□□□□ 0.84
SHANK1-201ENST00000293441 HSP90AB3PQ58FF7 597 aa20.3■□□□□ 0.84
SHANK1-201ENST00000293441 PPP6R1Q9UPN7 881 aa20.29■□□□□ 0.84
SHANK1-201ENST00000293441 GLRX3O76003 335 aaKnown RBP20.29■□□□□ 0.84
SHANK1-201ENST00000293441 CCDC181Q5TID7 509 aa20.29■□□□□ 0.84
SHANK1-201ENST00000293441 FAM177A1Q8N128 213 aaPredicted RBP20.29■□□□□ 0.84
SHANK1-201ENST00000293441 NEFHP12036 1026 aa20.29■□□□□ 0.84
SHANK1-201ENST00000293441 PRPF40BQ6NWY9 871 aaKnown RBP20.29■□□□□ 0.84
SHANK1-201ENST00000293441 LRPPRCP42704 1394 aaKnown RBP20.29■□□□□ 0.84
SHANK1-201ENST00000293441 IDI1Q13907 227 aa20.28■□□□□ 0.84
SHANK1-201ENST00000293441 LAMC3Q9Y6N6 1575 aa20.28■□□□□ 0.84
SHANK1-201ENST00000293441 ANKRD18BA2A2Z9 1011 aa20.28■□□□□ 0.84
SHANK1-201ENST00000293441 ZBTB3Q9H5J0 574 aa20.28■□□□□ 0.84
SHANK1-201ENST00000293441 MAP3K12Q12852 859 aa20.28■□□□□ 0.84
SHANK1-201ENST00000293441 CEP131Q9UPN4 1083 aa20.28■□□□□ 0.84
SHANK1-201ENST00000293441 ERLIN2O94905 339 aa20.27■□□□□ 0.84
SHANK1-201ENST00000293441 RANBP6O60518 1105 aaKnown RBP20.27■□□□□ 0.84
SHANK1-201ENST00000293441 CCDC96Q2M329 555 aa20.27■□□□□ 0.84
SHANK1-201ENST00000293441 HYPKQ9NX55 129 aa20.27■□□□□ 0.84
SHANK1-201ENST00000293441 LRRFIP2Q9Y608 721 aaKnown RBP20.27■□□□□ 0.84
SHANK1-201ENST00000293441 CBFA2T2O43439 604 aa20.27■□□□□ 0.84
SHANK1-201ENST00000293441 CCDC83Q8IWF9 413 aa20.27■□□□□ 0.84
SHANK1-201ENST00000293441 SSH1Q8WYL5 1049 aa20.27■□□□□ 0.84
SHANK1-201ENST00000293441 ZNF444Q8N0Y2 327 aaPredicted RBP20.27■□□□□ 0.83
SHANK1-201ENST00000293441 DNAAF4Q8WXU2 420 aa20.27■□□□□ 0.83
SHANK1-201ENST00000293441 ABCA10Q8WWZ4 1543 aa20.26■□□□□ 0.83
SHANK1-201ENST00000293441 TNIP1Q15025 636 aa20.26■□□□□ 0.83
SHANK1-201ENST00000293441 BACH2Q9BYV9 841 aa20.26■□□□□ 0.83
SHANK1-201ENST00000293441 PAXIP1Q6ZW49 1069 aaPredicted RBP20.26■□□□□ 0.83
SHANK1-201ENST00000293441 NUP62CLQ9H1M0 184 aa20.26■□□□□ 0.83
SHANK1-201ENST00000293441 A0A087WZG4 1122 aa20.26■□□□□ 0.83
SHANK1-201ENST00000293441 ABCC5O15440 1437 aa20.25■□□□□ 0.83
SHANK1-201ENST00000293441 C6orf229H3BNL8 230 aa20.25■□□□□ 0.83
SHANK1-201ENST00000293441 WDR78Q5VTH9 848 aa20.25■□□□□ 0.83
SHANK1-201ENST00000293441 ALDH1L2Q3SY69 923 aa20.25■□□□□ 0.83
SHANK1-201ENST00000293441 NOS1P29475 1434 aa20.24■□□□□ 0.83
SHANK1-201ENST00000293441 DHX8Q14562 1220 aaKnown RBP20.24■□□□□ 0.83
SHANK1-201ENST00000293441 GRIN2AQ12879 1464 aa20.24■□□□□ 0.83
SHANK1-201ENST00000293441 SCLT1Q96NL6 688 aa20.24■□□□□ 0.83
SHANK1-201ENST00000293441 AXDND1Q5T1B0 1012 aaPredicted RBP20.24■□□□□ 0.83
SHANK1-201ENST00000293441 VSIG10Q8N0Z9 540 aa20.24■□□□□ 0.83
SHANK1-201ENST00000293441 CCDC82Q8N4S0 544 aa20.24■□□□□ 0.83
SHANK1-201ENST00000293441 MAP3K2Q9Y2U5 619 aa20.24■□□□□ 0.83
SHANK1-201ENST00000293441 TXLNBQ8N3L3 684 aa20.23■□□□□ 0.83
SHANK1-201ENST00000293441 DBF4Q9UBU7 674 aaPredicted RBP20.23■□□□□ 0.83
SHANK1-201ENST00000293441 CHRNA2Q15822 529 aa20.23■□□□□ 0.83
SHANK1-201ENST00000293441 UPF3BQ9BZI7 483 aaKnown RBP20.22■□□□□ 0.83
SHANK1-201ENST00000293441 MYCNP04198 464 aaPredicted RBP20.22■□□□□ 0.83
SHANK1-201ENST00000293441 RARSP54136 660 aaKnown RBP20.22■□□□□ 0.83
SHANK1-201ENST00000293441 DENND4BO75064 1496 aaPredicted RBP20.22■□□□□ 0.83
SHANK1-201ENST00000293441 ZNF213O14771 459 aa20.22■□□□□ 0.83
SHANK1-201ENST00000293441 EIF5P55010 431 aaKnown RBP20.22■□□□□ 0.83
SHANK1-201ENST00000293441 FERMT3Q86UX7 667 aa20.22■□□□□ 0.83
SHANK1-201ENST00000293441 ABCC11Q96J66 1382 aa20.22■□□□□ 0.83
SHANK1-201ENST00000293441 ANKRD62A6NC57 917 aa20.22■□□□□ 0.83
SHANK1-201ENST00000293441 SEPT7Q16181 437 aaKnown RBP20.22■□□□□ 0.83
SHANK1-201ENST00000293441 FANCAO15360 1455 aa20.21■□□□□ 0.83
SHANK1-201ENST00000293441 SSR1P43307 286 aaKnown RBP20.21■□□□□ 0.83
SHANK1-201ENST00000293441 CAMK4Q16566 473 aa20.21■□□□□ 0.83
SHANK1-201ENST00000293441 ATP5J2-PTCD1G3V325 749 aa20.21■□□□□ 0.83
SHANK1-201ENST00000293441 GUCY1B3Q02153 619 aa20.21■□□□□ 0.83
SHANK1-201ENST00000293441 CTCFLQ8NI51 663 aaPredicted RBP20.21■□□□□ 0.83
SHANK1-201ENST00000293441 NEBLO76041 1014 aa20.21■□□□□ 0.83
SHANK1-201ENST00000293441 IFNL2Q8IZJ0 200 aa20.21■□□□□ 0.83
SHANK1-201ENST00000293441 IQCA1Q86XH1 822 aa20.2■□□□□ 0.82
SHANK1-201ENST00000293441 SLF2Q8IX21 1173 aa20.2■□□□□ 0.82
SHANK1-201ENST00000293441 ANKRD24Q8TF21 1146 aa20.2■□□□□ 0.82
SHANK1-201ENST00000293441 SLC4A8Q2Y0W8 1093 aa20.2■□□□□ 0.82
SHANK1-201ENST00000293441 SLC12A7Q9Y666 1083 aa20.2■□□□□ 0.82
SHANK1-201ENST00000293441 WDHD1O75717 1129 aaPredicted RBP20.2■□□□□ 0.82
SHANK1-201ENST00000293441 DESP17661 470 aa20.2■□□□□ 0.82
SHANK1-201ENST00000293441 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.2■□□□□ 0.82
SHANK1-201ENST00000293441 RFC4P35249 363 aa20.19■□□□□ 0.82
SHANK1-201ENST00000293441 CUL5Q93034 780 aa20.19■□□□□ 0.82
SHANK1-201ENST00000293441 ZNF622Q969S3 477 aaKnown RBP eCLIP20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms