RNA–Protein interactions for RNA: ENST00000288022.1

PDF-201, Transcript of peptide deformylase, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDF, Length 1,158 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDF-201ENST00000288022 PDGFDQ9GZP0 370 aaPredicted RBP33.48■■■□□ 2.95
PDF-201ENST00000288022 GNAT3A8MTJ3 354 aa33.47■■■□□ 2.95
PDF-201ENST00000288022 HMGB2P26583 209 aaKnown RBP33.47■■■□□ 2.95
PDF-201ENST00000288022 TFCP2L1Q9NZI6 479 aa33.47■■■□□ 2.95
PDF-201ENST00000288022 NEFMP07197 916 aa33.46■■■□□ 2.95
PDF-201ENST00000288022 SLC52A2Q9HAB3 445 aa33.46■■■□□ 2.95
PDF-201ENST00000288022 TAF1LQ8IZX4 1826 aa33.45■■■□□ 2.95
PDF-201ENST00000288022 RBM42Q9BTD8 480 aaKnown RBP33.45■■■□□ 2.95
PDF-201ENST00000288022 ATP6V1AP38606 617 aa33.44■■■□□ 2.94
PDF-201ENST00000288022 ADAMTS7Q9UKP4 1686 aa33.43■■■□□ 2.94
PDF-201ENST00000288022 MRC1P22897 1456 aa33.43■■■□□ 2.94
PDF-201ENST00000288022 SPON1Q9HCB6 807 aa33.42■■■□□ 2.94
PDF-201ENST00000288022 ZBTB7AO95365 584 aa33.41■■■□□ 2.94
PDF-201ENST00000288022 TUBGCP6Q96RT7 1819 aa33.4■■■□□ 2.94
PDF-201ENST00000288022 C4BP0C0L5 1744 aa33.4■■■□□ 2.94
PDF-201ENST00000288022 QSER1Q2KHR3 1735 aa33.4■■■□□ 2.94
PDF-201ENST00000288022 PTCD1O75127 700 aaKnown RBP33.39■■■□□ 2.94
PDF-201ENST00000288022 PNNQ9H307 717 aaKnown RBP33.39■■■□□ 2.94
PDF-201ENST00000288022 PNPLA7Q6ZV29 1317 aa33.38■■■□□ 2.93
PDF-201ENST00000288022 TEFQ10587 303 aa33.38■■■□□ 2.93
PDF-201ENST00000288022 ITPK1Q13572 414 aa33.38■■■□□ 2.93
PDF-201ENST00000288022 IL17REQ8NFR9 667 aa33.38■■■□□ 2.93
PDF-201ENST00000288022 AK7Q96M32 723 aa33.38■■■□□ 2.93
PDF-201ENST00000288022 LINC00116Q8NCU8 138 aa33.37■■■□□ 2.93
PDF-201ENST00000288022 RTF1Q92541 710 aaKnown RBP33.36■■■□□ 2.93
PDF-201ENST00000288022 MAPK8IP3Q9UPT6 1336 aa33.35■■■□□ 2.93
PDF-201ENST00000288022 ATF5Q9Y2D1 282 aaPredicted RBP33.35■■■□□ 2.93
PDF-201ENST00000288022 MSH5O43196 834 aa33.34■■■□□ 2.93
PDF-201ENST00000288022 WDR43Q15061 677 aaKnown RBP eCLIP33.34■■■□□ 2.93
PDF-201ENST00000288022 SLC4A9Q96Q91 983 aa33.34■■■□□ 2.93
PDF-201ENST00000288022 PLEKHF1Q96S99 279 aa33.34■■■□□ 2.93
PDF-201ENST00000288022 ZNF831Q5JPB2 1677 aa33.33■■■□□ 2.93
PDF-201ENST00000288022 SLC39A6Q13433 755 aa33.33■■■□□ 2.93
PDF-201ENST00000288022 MTFR1LQ9H019 292 aa33.33■■■□□ 2.93
PDF-201ENST00000288022 PPP1R1BQ9UD71 204 aaPredicted RBP33.31■■■□□ 2.92
PDF-201ENST00000288022 MCM10Q7L590 875 aa33.3■■■□□ 2.92
PDF-201ENST00000288022 CEMIPQ8WUJ3 1361 aa33.3■■■□□ 2.92
PDF-201ENST00000288022 COL23A1Q86Y22 540 aaPredicted RBP33.29■■■□□ 2.92
PDF-201ENST00000288022 GNPATO15228 680 aa33.28■■■□□ 2.92
PDF-201ENST00000288022 ANP32CO43423 234 aa33.28■■■□□ 2.92
PDF-201ENST00000288022 PHF14O94880 888 aa33.28■■■□□ 2.92
PDF-201ENST00000288022 TTC5Q8N0Z6 440 aa33.28■■■□□ 2.92
PDF-201ENST00000288022 FLAD1Q8NFF5 587 aa33.28■■■□□ 2.92
PDF-201ENST00000288022 SLC16A10Q8TF71 515 aa33.28■■■□□ 2.92
PDF-201ENST00000288022 SIPA1L3O60292 1781 aaPredicted RBP33.27■■■□□ 2.92
PDF-201ENST00000288022 HTATSF1O43719 755 aaKnown RBP33.27■■■□□ 2.92
PDF-201ENST00000288022 DCTN1Q14203 1278 aa33.27■■■□□ 2.92
PDF-201ENST00000288022 NFE2L2Q16236 605 aa33.27■■■□□ 2.92
PDF-201ENST00000288022 COL5A3P25940 1745 aaPredicted RBP33.26■■■□□ 2.92
PDF-201ENST00000288022 UBR3Q6ZT12 1888 aa33.26■■■□□ 2.91
PDF-201ENST00000288022 DLG5Q8TDM6 1919 aa33.25■■■□□ 2.91
PDF-201ENST00000288022 KCPQ6ZWJ8 1503 aa33.24■■■□□ 2.91
PDF-201ENST00000288022 SMIM5Q71RC9 77 aa33.24■■■□□ 2.91
PDF-201ENST00000288022 TJP1Q07157 1748 aa33.24■■■□□ 2.91
PDF-201ENST00000288022 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP33.23■■■□□ 2.91
PDF-201ENST00000288022 PTGER2P43116 358 aa33.23■■■□□ 2.91
PDF-201ENST00000288022 CCDC146Q8IYE0 955 aa33.23■■■□□ 2.91
PDF-201ENST00000288022 SRCAPQ6ZRS2 3230 aa33.23■■■□□ 2.91
PDF-201ENST00000288022 BTBD11A6QL63 1104 aa33.22■■■□□ 2.91
PDF-201ENST00000288022 SSFA2P28290 1259 aa33.22■■■□□ 2.91
PDF-201ENST00000288022 AMIGO3Q86WK7 504 aa33.22■■■□□ 2.91
PDF-201ENST00000288022 UBR2Q8IWV8 1755 aa33.21■■■□□ 2.91
PDF-201ENST00000288022 RC3H1Q5TC82 1133 aaKnown RBP33.21■■■□□ 2.91
PDF-201ENST00000288022 ZNF790Q6PG37 636 aa33.21■■■□□ 2.91
PDF-201ENST00000288022 ADAMTS8Q9UP79 889 aa33.21■■■□□ 2.91
PDF-201ENST00000288022 CNTNAP4Q9C0A0 1308 aa33.21■■■□□ 2.91
PDF-201ENST00000288022 CICQ96RK0 1608 aaPredicted RBP33.2■■■□□ 2.91
PDF-201ENST00000288022 DNAJC10Q8IXB1 793 aa33.2■■■□□ 2.91
PDF-201ENST00000288022 RTCBQ9Y3I0 505 aaKnown RBP33.2■■■□□ 2.91
PDF-201ENST00000288022 CRKLP46109 303 aaKnown RBP33.18■■■□□ 2.9
PDF-201ENST00000288022 RUNDC1Q96C34 613 aa33.17■■■□□ 2.9
PDF-201ENST00000288022 POLD1P28340 1107 aa33.16■■■□□ 2.9
PDF-201ENST00000288022 RIPK4P57078 832 aa33.16■■■□□ 2.9
PDF-201ENST00000288022 MSL1Q68DK7 614 aa33.16■■■□□ 2.9
PDF-201ENST00000288022 VSIG10Q8N0Z9 540 aa33.16■■■□□ 2.9
PDF-201ENST00000288022 ZNF496Q96IT1 587 aaPredicted RBP33.16■■■□□ 2.9
PDF-201ENST00000288022 SGIP1Q9BQI5 828 aa33.16■■■□□ 2.9
PDF-201ENST00000288022 RPS6KA4O75676 772 aa33.14■■■□□ 2.9
PDF-201ENST00000288022 TMPOP42166 694 aaKnown RBP33.14■■■□□ 2.9
PDF-201ENST00000288022 TRAPPC3LQ5T215 181 aa33.14■■■□□ 2.9
PDF-201ENST00000288022 KCNQ3O43525 872 aa33.13■■■□□ 2.89
PDF-201ENST00000288022 TAF7Q15545 349 aaPredicted RBP33.13■■■□□ 2.89
PDF-201ENST00000288022 CCDC184Q52MB2 194 aa33.13■■■□□ 2.89
PDF-201ENST00000288022 FMNL2Q96PY5 1086 aa33.13■■■□□ 2.89
PDF-201ENST00000288022 THUMPD2Q9BTF0 503 aaKnown RBP33.13■■■□□ 2.89
PDF-201ENST00000288022 RRP7AQ9Y3A4 280 aaKnown RBP33.13■■■□□ 2.89
PDF-201ENST00000288022 MYH14Q7Z406 1995 aaKnown RBP33.12■■■□□ 2.89
PDF-201ENST00000288022 HEG1Q9ULI3 1381 aa33.12■■■□□ 2.89
PDF-201ENST00000288022 NEUROD2Q15784 382 aa33.12■■■□□ 2.89
PDF-201ENST00000288022 ARXQ96QS3 562 aa33.12■■■□□ 2.89
PDF-201ENST00000288022 CCDC87Q9NVE4 849 aa33.12■■■□□ 2.89
PDF-201ENST00000288022 COL24A1Q17RW2 1714 aa33.11■■■□□ 2.89
PDF-201ENST00000288022 CYP19A1P11511 503 aaPredicted RBP33.11■■■□□ 2.89
PDF-201ENST00000288022 LMOD3Q0VAK6 560 aa33.1■■■□□ 2.89
PDF-201ENST00000288022 INTS5Q6P9B9 1019 aaKnown RBP33.1■■■□□ 2.89
PDF-201ENST00000288022 ADRA2BP18089 450 aa33.09■■■□□ 2.89
PDF-201ENST00000288022 ARHGEF1Q92888 912 aaKnown RBP33.08■■■□□ 2.89
PDF-201ENST00000288022 MRS2Q9HD23 443 aa33.08■■■□□ 2.89
PDF-201ENST00000288022 MIS18AQ9NYP9 233 aa33.08■■■□□ 2.89
PDF-201ENST00000288022 STARD3NLO95772 234 aa33.07■■■□□ 2.88
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms