RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 TTC5Q8N0Z6 440 aa8.63□□□□□ -1.03
CD44-204ENST00000279452 PROM2Q8N271 834 aa8.63□□□□□ -1.03
CD44-204ENST00000279452 SLC52A2Q9HAB3 445 aa8.63□□□□□ -1.03
CD44-204ENST00000279452 ANO8Q9HCE9 1232 aaPredicted RBP8.63□□□□□ -1.03
CD44-204ENST00000279452 EP400Q96L91 3159 aa8.63□□□□□ -1.03
CD44-204ENST00000279452 ATP6V1AP38606 617 aa8.62□□□□□ -1.03
CD44-204ENST00000279452 DCTN1Q14203 1278 aa8.62□□□□□ -1.03
CD44-204ENST00000279452 CCDC184Q52MB2 194 aa8.62□□□□□ -1.03
CD44-204ENST00000279452 AK7Q96M32 723 aa8.62□□□□□ -1.03
CD44-204ENST00000279452 ATG3Q9NT62 314 aa8.62□□□□□ -1.03
CD44-204ENST00000279452 LRRC4BQ9NT99 713 aa8.62□□□□□ -1.03
CD44-204ENST00000279452 TFCP2L1Q9NZI6 479 aa8.62□□□□□ -1.03
CD44-204ENST00000279452 ADAMTS8Q9UP79 889 aa8.62□□□□□ -1.03
CD44-204ENST00000279452 RRP7AQ9Y3A4 280 aaKnown RBP8.62□□□□□ -1.03
CD44-204ENST00000279452 ITGB4P16144 1822 aa8.61□□□□□ -1.03
CD44-204ENST00000279452 LOC102724428A0A0B4J2F2 783 aa8.61□□□□□ -1.03
CD44-204ENST00000279452 SIK1P57059 783 aa8.61□□□□□ -1.03
CD44-204ENST00000279452 SLC39A6Q13433 755 aa8.61□□□□□ -1.03
CD44-204ENST00000279452 NFE2L2Q16236 605 aa8.61□□□□□ -1.03
CD44-204ENST00000279452 SLC15A2Q16348 729 aa8.61□□□□□ -1.03
CD44-204ENST00000279452 ZNF827Q17R98 1081 aa8.61□□□□□ -1.03
CD44-204ENST00000279452 RUNDC1Q96C34 613 aa8.61□□□□□ -1.03
CD44-204ENST00000279452 PLEKHF1Q96S99 279 aa8.61□□□□□ -1.03
CD44-204ENST00000279452 MRC1P22897 1456 aa8.61□□□□□ -1.03
CD44-204ENST00000279452 SENP3-EIF4A1A0A087X0R7 540 aa8.6□□□□□ -1.03
CD44-204ENST00000279452 BTBD11A6QL63 1104 aa8.6□□□□□ -1.03
CD44-204ENST00000279452 PHF14O94880 888 aa8.6□□□□□ -1.03
CD44-204ENST00000279452 RIPK4P57078 832 aa8.6□□□□□ -1.03
CD44-204ENST00000279452 LMOD3Q0VAK6 560 aa8.6□□□□□ -1.03
CD44-204ENST00000279452 IL17REQ8NFR9 667 aa8.6□□□□□ -1.03
CD44-204ENST00000279452 THUMPD2Q9BTF0 503 aaKnown RBP8.6□□□□□ -1.03
CD44-204ENST00000279452 SCN11AQ9UI33 1791 aa8.6□□□□□ -1.03
CD44-204ENST00000279452 LY75O60449 1722 aa8.6□□□□□ -1.03
CD44-204ENST00000279452 C5P01031 1676 aa8.59□□□□□ -1.03
CD44-204ENST00000279452 PAPPAQ13219 1627 aa8.59□□□□□ -1.03
CD44-204ENST00000279452 KAT6BQ8WYB5 2073 aa8.59□□□□□ -1.03
CD44-204ENST00000279452 GNPATO15228 680 aa8.59□□□□□ -1.03
CD44-204ENST00000279452 HTATSF1O43719 755 aaKnown RBP8.59□□□□□ -1.03
CD44-204ENST00000279452 HMGB2P26583 209 aaKnown RBP8.59□□□□□ -1.03
CD44-204ENST00000279452 DIEXFQ68CQ4 756 aaKnown RBP8.59□□□□□ -1.03
CD44-204ENST00000279452 FAM9BQ8IZU0 186 aa8.59□□□□□ -1.03
CD44-204ENST00000279452 LINC00116Q8NCU8 138 aa8.59□□□□□ -1.03
CD44-204ENST00000279452 ZBTB7AO95365 584 aa8.58□□□□□ -1.04
CD44-204ENST00000279452 TMPOP42166 694 aaKnown RBP8.58□□□□□ -1.04
CD44-204ENST00000279452 ITPK1Q13572 414 aa8.58□□□□□ -1.04
CD44-204ENST00000279452 LAS1LQ9Y4W2 734 aaKnown RBP8.58□□□□□ -1.04
CD44-204ENST00000279452 CEMIPQ8WUJ3 1361 aa8.58□□□□□ -1.04
CD44-204ENST00000279452 ADAMTS7Q9UKP4 1686 aa8.57□□□□□ -1.04
CD44-204ENST00000279452 APAF1O14727 1248 aa8.57□□□□□ -1.04
CD44-204ENST00000279452 ZNF790Q6PG37 636 aa8.57□□□□□ -1.04
CD44-204ENST00000279452 PPP4R3CPQ6ZMV5 832 aa8.57□□□□□ -1.04
CD44-204ENST00000279452 AKT1S1Q96B36 256 aa8.57□□□□□ -1.04
CD44-204ENST00000279452 PDGFDQ9GZP0 370 aaPredicted RBP8.57□□□□□ -1.04
CD44-204ENST00000279452 MIS18AQ9NYP9 233 aa8.57□□□□□ -1.04
CD44-204ENST00000279452 PPP1R1BQ9UD71 204 aaPredicted RBP8.57□□□□□ -1.04
CD44-204ENST00000279452 ZNF330Q9Y3S2 320 aaPredicted RBP8.57□□□□□ -1.04
CD44-204ENST00000279452 C4BP0C0L5 1744 aa8.57□□□□□ -1.04
CD44-204ENST00000279452 PNPLA7Q6ZV29 1317 aa8.56□□□□□ -1.04
CD44-204ENST00000279452 TAF7Q15545 349 aaPredicted RBP8.56□□□□□ -1.04
CD44-204ENST00000279452 SMIM5Q71RC9 77 aa8.56□□□□□ -1.04
CD44-204ENST00000279452 DNAJC10Q8IXB1 793 aa8.56□□□□□ -1.04
CD44-204ENST00000279452 PNISRQ8TF01 805 aaKnown RBP8.56□□□□□ -1.04
CD44-204ENST00000279452 ZNF496Q96IT1 587 aaPredicted RBP8.56□□□□□ -1.04
CD44-204ENST00000279452 FMNL2Q96PY5 1086 aa8.56□□□□□ -1.04
CD44-204ENST00000279452 SLC4A9Q96Q91 983 aa8.56□□□□□ -1.04
CD44-204ENST00000279452 TSPYL4Q9UJ04 414 aa8.56□□□□□ -1.04
CD44-204ENST00000279452 ATF5Q9Y2D1 282 aaPredicted RBP8.56□□□□□ -1.04
CD44-204ENST00000279452 SALL2Q9Y467 1007 aaPredicted RBP8.56□□□□□ -1.04
CD44-204ENST00000279452 KCPQ6ZWJ8 1503 aa8.55□□□□□ -1.04
CD44-204ENST00000279452 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.55□□□□□ -1.04
CD44-204ENST00000279452 KCNQ3O43525 872 aa8.55□□□□□ -1.04
CD44-204ENST00000279452 CRKLP46109 303 aaKnown RBP8.55□□□□□ -1.04
CD44-204ENST00000279452 MSL1Q68DK7 614 aa8.55□□□□□ -1.04
CD44-204ENST00000279452 NPM2Q86SE8 214 aaKnown RBP8.55□□□□□ -1.04
CD44-204ENST00000279452 KLHL34Q8N239 644 aa8.55□□□□□ -1.04
CD44-204ENST00000279452 ARXQ96QS3 562 aa8.55□□□□□ -1.04
CD44-204ENST00000279452 SPON1Q9HCB6 807 aa8.55□□□□□ -1.04
CD44-204ENST00000279452 RTCBQ9Y3I0 505 aaKnown RBP8.55□□□□□ -1.04
CD44-204ENST00000279452 VIRMAQ69YN4 1812 aaKnown RBP8.54□□□□□ -1.04
CD44-204ENST00000279452 HEG1Q9ULI3 1381 aa8.54□□□□□ -1.04
CD44-204ENST00000279452 STARD3NLO95772 234 aa8.54□□□□□ -1.04
CD44-204ENST00000279452 CANXP27824 592 aaKnown RBP8.54□□□□□ -1.04
CD44-204ENST00000279452 COL23A1Q86Y22 540 aaPredicted RBP8.54□□□□□ -1.04
CD44-204ENST00000279452 FLAD1Q8NFF5 587 aa8.54□□□□□ -1.04
CD44-204ENST00000279452 MTFR1LQ9H019 292 aa8.54□□□□□ -1.04
CD44-204ENST00000279452 CCDC87Q9NVE4 849 aa8.54□□□□□ -1.04
CD44-204ENST00000279452 TJP1Q07157 1748 aa8.54□□□□□ -1.04
CD44-204ENST00000279452 CNTNAP4Q9C0A0 1308 aa8.54□□□□□ -1.04
CD44-204ENST00000279452 SSFA2P28290 1259 aa8.53□□□□□ -1.04
CD44-204ENST00000279452 POLD1P28340 1107 aa8.53□□□□□ -1.04
CD44-204ENST00000279452 RFC4P35249 363 aa8.53□□□□□ -1.04
CD44-204ENST00000279452 CALD1Q05682 793 aaKnown RBP8.53□□□□□ -1.04
CD44-204ENST00000279452 TRAPPC3LQ5T215 181 aa8.53□□□□□ -1.04
CD44-204ENST00000279452 VSIG10Q8N0Z9 540 aa8.53□□□□□ -1.04
CD44-204ENST00000279452 TRIM35Q9UPQ4 493 aa8.53□□□□□ -1.04
CD44-204ENST00000279452 SIPA1L3O60292 1781 aaPredicted RBP8.53□□□□□ -1.04
CD44-204ENST00000279452 CASZ1Q86V15 1759 aa8.53□□□□□ -1.04
CD44-204ENST00000279452 DLG5Q8TDM6 1919 aa8.52□□□□□ -1.04
CD44-204ENST00000279452 PRAMEF22A3QJZ6 481 aa8.52□□□□□ -1.05
CD44-204ENST00000279452 SNRPA1P09661 255 aaKnown RBP8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms