RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 ANKRD44Q8N8A2 993 aa17.34■□□□□ 0.37
SDC1-201ENST00000254351 PDE1AP54750 535 aa17.34■□□□□ 0.37
SDC1-201ENST00000254351 DRC7Q8IY82 874 aa17.34■□□□□ 0.37
SDC1-201ENST00000254351 ARHGAP45Q92619 1136 aa17.34■□□□□ 0.37
SDC1-201ENST00000254351 PRIMPOLQ96LW4 560 aa17.34■□□□□ 0.37
SDC1-201ENST00000254351 IL1RAPL2Q9NP60 686 aa17.34■□□□□ 0.37
SDC1-201ENST00000254351 PHF14O94880 888 aa17.33■□□□□ 0.37
SDC1-201ENST00000254351 HDGFL2Q7Z4V5 671 aaPredicted RBP17.33■□□□□ 0.37
SDC1-201ENST00000254351 UNC5CLQ8IV45 518 aa17.33■□□□□ 0.37
SDC1-201ENST00000254351 SLC4A2P04920 1241 aa17.33■□□□□ 0.36
SDC1-201ENST00000254351 IDI1Q13907 227 aa17.33■□□□□ 0.36
SDC1-201ENST00000254351 IL25Q9H293 177 aa17.33■□□□□ 0.36
SDC1-201ENST00000254351 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.33■□□□□ 0.367e-7■□□□□ 9.8
SDC1-201ENST00000254351 V9GYY5 206 aaPredicted RBP17.33■□□□□ 0.36
SDC1-201ENST00000254351 MSH6P52701 1360 aa17.33■□□□□ 0.36
SDC1-201ENST00000254351 NPHP1O15259 732 aa17.32■□□□□ 0.36
SDC1-201ENST00000254351 SBNO2Q9Y2G9 1366 aa17.32■□□□□ 0.36
SDC1-201ENST00000254351 KCNF1Q9H3M0 494 aa17.32■□□□□ 0.36
SDC1-201ENST00000254351 LRMPQ12912 555 aa17.31■□□□□ 0.36
SDC1-201ENST00000254351 MYOM2P54296 1465 aa17.31■□□□□ 0.36
SDC1-201ENST00000254351 PTGS1P23219 599 aa17.31■□□□□ 0.36
SDC1-201ENST00000254351 MCCP23508 829 aa17.31■□□□□ 0.36
SDC1-201ENST00000254351 FGD1P98174 961 aa17.31■□□□□ 0.36
SDC1-201ENST00000254351 AEBP1Q8IUX7 1158 aa17.31■□□□□ 0.36
SDC1-201ENST00000254351 IFT57Q9NWB7 429 aa17.31■□□□□ 0.36
SDC1-201ENST00000254351 IFT172Q9UG01 1749 aa17.3■□□□□ 0.36
SDC1-201ENST00000254351 FKBP5Q13451 457 aaPredicted RBP17.3■□□□□ 0.36
SDC1-201ENST00000254351 ESYT1Q9BSJ8 1104 aa17.3■□□□□ 0.36
SDC1-201ENST00000254351 KDM4AO75164 1064 aa17.3■□□□□ 0.36
SDC1-201ENST00000254351 CDK19Q9BWU1 502 aa17.3■□□□□ 0.36
SDC1-201ENST00000254351 MED14O60244 1454 aa17.3■□□□□ 0.36
SDC1-201ENST00000254351 CCDC183Q5T5S1 534 aa17.3■□□□□ 0.36
SDC1-201ENST00000254351 FAM173BQ6P4H8 233 aa17.3■□□□□ 0.36
SDC1-201ENST00000254351 G2E3Q7L622 706 aa17.3■□□□□ 0.36
SDC1-201ENST00000254351 FERMT3Q86UX7 667 aa17.3■□□□□ 0.36
SDC1-201ENST00000254351 NME9Q86XW9 330 aa17.3■□□□□ 0.36
SDC1-201ENST00000254351 CFAP44Q96MT7 982 aa17.3■□□□□ 0.36
SDC1-201ENST00000254351 FER1L4A9Z1Z3 1794 aa17.29■□□□□ 0.36
SDC1-201ENST00000254351 VPS37CA5D8V6 355 aaPredicted RBP17.29■□□□□ 0.36
SDC1-201ENST00000254351 UTP14CQ5TAP6 766 aaKnown RBP17.29■□□□□ 0.36
SDC1-201ENST00000254351 ADGRB2O60241 1585 aa17.29■□□□□ 0.36
SDC1-201ENST00000254351 NUTM1Q86Y26 1132 aa17.29■□□□□ 0.36
SDC1-201ENST00000254351 CKAP2LQ8IYA6 745 aa17.29■□□□□ 0.36
SDC1-201ENST00000254351 RPGRIP1LQ68CZ1 1315 aa17.29■□□□□ 0.36
SDC1-201ENST00000254351 NCKAP5LQ9HCH0 1330 aa17.29■□□□□ 0.36
SDC1-201ENST00000254351 DNM1Q05193 864 aaKnown RBP17.28■□□□□ 0.36
SDC1-201ENST00000254351 RPAP2Q8IXW5 612 aaPredicted RBP17.28■□□□□ 0.36
SDC1-201ENST00000254351 TRERF1Q96PN7 1200 aa17.28■□□□□ 0.36
SDC1-201ENST00000254351 NRBP1Q9UHY1 535 aa17.28■□□□□ 0.36
SDC1-201ENST00000254351 TMEM131LA2VDJ0 1609 aa17.28■□□□□ 0.36
SDC1-201ENST00000254351 WAPLQ7Z5K2 1190 aa17.27■□□□□ 0.36
SDC1-201ENST00000254351 ZNF428Q96B54 188 aa17.27■□□□□ 0.36
SDC1-201ENST00000254351 ERICH4A6NGS2 130 aa17.27■□□□□ 0.36
SDC1-201ENST00000254351 MX1P20591 662 aa17.27■□□□□ 0.36
SDC1-201ENST00000254351 LUZP1Q86V48 1076 aa17.27■□□□□ 0.36
SDC1-201ENST00000254351 WDR33Q9C0J8 1336 aaKnown RBP17.27■□□□□ 0.36
SDC1-201ENST00000254351 QRICH2Q9H0J4 1663 aa17.27■□□□□ 0.36
SDC1-201ENST00000254351 NSD2O96028 1365 aa17.26■□□□□ 0.35
SDC1-201ENST00000254351 PPLO60437 1756 aa17.26■□□□□ 0.35
SDC1-201ENST00000254351 PTCH1Q13635 1447 aa17.26■□□□□ 0.35
SDC1-201ENST00000254351 NRXN1Q9ULB1 1477 aa17.26■□□□□ 0.35
SDC1-201ENST00000254351 NUTM2FA1L443 756 aa17.25■□□□□ 0.35
SDC1-201ENST00000254351 VGFO15240 615 aaPredicted RBP17.25■□□□□ 0.35
SDC1-201ENST00000254351 KIAA1524Q8TCG1 905 aa17.25■□□□□ 0.35
SDC1-201ENST00000254351 GTPBP4Q9BZE4 634 aaKnown RBP17.25■□□□□ 0.35
SDC1-201ENST00000254351 RTL1A6NKG5 1358 aa17.25■□□□□ 0.35
SDC1-201ENST00000254351 SYT1P21579 422 aa17.25■□□□□ 0.35
SDC1-201ENST00000254351 CCDC186Q7Z3E2 898 aa17.25■□□□□ 0.35
SDC1-201ENST00000254351 SPG7Q9UQ90 795 aa17.25■□□□□ 0.35
SDC1-201ENST00000254351 TNRQ92752 1358 aa17.25■□□□□ 0.35
SDC1-201ENST00000254351 TULP4Q9NRJ4 1543 aa17.25■□□□□ 0.35
SDC1-201ENST00000254351 CHMLP26374 656 aa17.25■□□□□ 0.35
SDC1-201ENST00000254351 NCBP3Q53F19 620 aaKnown RBP17.25■□□□□ 0.35
SDC1-201ENST00000254351 CCDC83Q8IWF9 413 aa17.25■□□□□ 0.35
SDC1-201ENST00000254351 DIAPH3Q9NSV4 1193 aa17.25■□□□□ 0.35
SDC1-201ENST00000254351 PNMA6EA0A0J9YXQ4 647 aa17.24■□□□□ 0.35
SDC1-201ENST00000254351 FAM184AQ8NB25 1140 aa17.24■□□□□ 0.35
SDC1-201ENST00000254351 NEXMIFQ5QGS0 1516 aa17.24■□□□□ 0.35
SDC1-201ENST00000254351 LRRC7Q96NW7 1537 aa17.24■□□□□ 0.35
SDC1-201ENST00000254351 C3P01024 1663 aa17.24■□□□□ 0.35
SDC1-201ENST00000254351 BRPF1P55201 1214 aaPredicted RBP17.24■□□□□ 0.35
SDC1-201ENST00000254351 SULT6B1Q6IMI4 303 aa17.24■□□□□ 0.35
SDC1-201ENST00000254351 HMMRO75330 724 aa17.23■□□□□ 0.35
SDC1-201ENST00000254351 CUL4AQ13619 759 aa17.23■□□□□ 0.35
SDC1-201ENST00000254351 STX6O43752 255 aa17.23■□□□□ 0.35
SDC1-201ENST00000254351 FBXW7Q969H0 707 aa17.23■□□□□ 0.35
SDC1-201ENST00000254351 SMC3Q9UQE7 1217 aa17.23■□□□□ 0.35
SDC1-201ENST00000254351 TCHHQ07283 1943 aa17.23■□□□□ 0.35
SDC1-201ENST00000254351 ZNF853P0CG23 659 aa17.23■□□□□ 0.35
SDC1-201ENST00000254351 PLCD3Q8N3E9 789 aa17.23■□□□□ 0.35
SDC1-201ENST00000254351 MYO5BQ9ULV0 1848 aa17.23■□□□□ 0.35
SDC1-201ENST00000254351 COL3A1P02461 1466 aaPredicted RBP17.22■□□□□ 0.35
SDC1-201ENST00000254351 ATP10DQ9P241 1426 aa17.22■□□□□ 0.35
SDC1-201ENST00000254351 LARGE1O95461 756 aa17.22■□□□□ 0.35
SDC1-201ENST00000254351 GTF2F1P35269 517 aaKnown RBP eCLIP17.22■□□□□ 0.35
SDC1-201ENST00000254351 NECAB1Q8N987 351 aa17.22■□□□□ 0.35
SDC1-201ENST00000254351 KIAA1210Q9ULL0 1709 aa17.22■□□□□ 0.35
SDC1-201ENST00000254351 PIK3R4Q99570 1358 aa17.22■□□□□ 0.35
SDC1-201ENST00000254351 LETM1O95202 739 aaPredicted RBP17.22■□□□□ 0.35
SDC1-201ENST00000254351 ZSCAN22P10073 491 aaPredicted RBP17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms