RNA–Protein interactions for RNA: ENST00000244745.3

SOX4-201, Transcript of SRY-box 4, humanhuman

APPRIS P1 BASIC

Gene SOX4, Length 5,852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4-201ENST00000244745 PPP4R3BQ5MIZ7 849 aa23.32■■□□□ 1.32
SOX4-201ENST00000244745 BOLA2Q9H3K6 86 aa23.32■■□□□ 1.32
SOX4-201ENST00000244745 NUCB1Q02818 461 aa23.32■■□□□ 1.32
SOX4-201ENST00000244745 PCDHB15Q9Y5E8 787 aa23.32■■□□□ 1.32
SOX4-201ENST00000244745 ASXL1Q8IXJ9 1541 aa23.32■■□□□ 1.32
SOX4-201ENST00000244745 ZSCAN25Q6NSZ9 544 aa23.31■■□□□ 1.32
SOX4-201ENST00000244745 NACAP1Q9BZK3 213 aa23.31■■□□□ 1.32
SOX4-201ENST00000244745 LAMC3Q9Y6N6 1575 aa23.31■■□□□ 1.32
SOX4-201ENST00000244745 SMTNL1A8MU46 457 aa23.31■■□□□ 1.32
SOX4-201ENST00000244745 CDKL5O76039 1030 aa23.31■■□□□ 1.32
SOX4-201ENST00000244745 TTC22Q5TAA0 569 aa23.31■■□□□ 1.32
SOX4-201ENST00000244745 CCDC191Q8NCU4 936 aa23.31■■□□□ 1.32
SOX4-201ENST00000244745 ZNHIT6Q9NWK9 470 aaKnown RBP23.31■■□□□ 1.32
SOX4-201ENST00000244745 CTNNA3Q9UI47 895 aa23.31■■□□□ 1.32
SOX4-201ENST00000244745 MBIPQ9NS73 344 aa23.3■■□□□ 1.32
SOX4-201ENST00000244745 PROSER2Q86WR7 435 aaPredicted RBP23.3■■□□□ 1.32
SOX4-201ENST00000244745 USHBP1Q8N6Y0 703 aa23.3■■□□□ 1.32
SOX4-201ENST00000244745 TSHZ3Q63HK5 1081 aa23.3■■□□□ 1.32
SOX4-201ENST00000244745 CGNQ9P2M7 1197 aaKnown RBP23.3■■□□□ 1.32
SOX4-201ENST00000244745 NSD2O96028 1365 aa23.29■■□□□ 1.32
SOX4-201ENST00000244745 HSP90AB2PQ58FF8 381 aa23.29■■□□□ 1.32
SOX4-201ENST00000244745 PDIA4P13667 645 aaKnown RBP23.29■■□□□ 1.32
SOX4-201ENST00000244745 ZSCAN23Q3MJ62 389 aa23.29■■□□□ 1.32
SOX4-201ENST00000244745 SH2B1Q9NRF2 756 aaPredicted RBP23.29■■□□□ 1.32
SOX4-201ENST00000244745 PTPRCP08575 1304 aa23.29■■□□□ 1.32
SOX4-201ENST00000244745 LIMCH1Q9UPQ0 1083 aa23.29■■□□□ 1.32
SOX4-201ENST00000244745 XRCC6P12956 609 aaKnown RBP eCLIP23.28■■□□□ 1.32
SOX4-201ENST00000244745 DYNC1I1O14576 645 aa23.28■■□□□ 1.32
SOX4-201ENST00000244745 KIAA0754O94854 1291 aa23.28■■□□□ 1.32
SOX4-201ENST00000244745 PARD3Q8TEW0 1356 aa23.28■■□□□ 1.32
SOX4-201ENST00000244745 HDAC1Q13547 482 aaPredicted RBP23.28■■□□□ 1.32
SOX4-201ENST00000244745 CCDC85AQ96PX6 553 aaPredicted RBP23.28■■□□□ 1.32
SOX4-201ENST00000244745 IMMTQ16891 758 aaKnown RBP23.27■■□□□ 1.32
SOX4-201ENST00000244745 CKAP2LQ8IYA6 745 aa23.27■■□□□ 1.32
SOX4-201ENST00000244745 GNL3LQ9NVN8 582 aaKnown RBP23.27■■□□□ 1.32
SOX4-201ENST00000244745 FAM83GA6ND36 823 aa23.27■■□□□ 1.32
SOX4-201ENST00000244745 TAF7Q15545 349 aaPredicted RBP23.27■■□□□ 1.32
SOX4-201ENST00000244745 PTPN14Q15678 1187 aa23.27■■□□□ 1.32
SOX4-201ENST00000244745 HSP90AB3PQ58FF7 597 aa23.27■■□□□ 1.32
SOX4-201ENST00000244745 PEG3Q9GZU2 1588 aa23.27■■□□□ 1.32
SOX4-201ENST00000244745 ADGRL1O94910 1474 aa23.27■■□□□ 1.32
SOX4-201ENST00000244745 THEMISQ8N1K5 641 aaPredicted RBP23.27■■□□□ 1.32
SOX4-201ENST00000244745 CCDC8Q9H0W5 538 aaPredicted RBP23.27■■□□□ 1.32
SOX4-201ENST00000244745 CEP126Q9P2H0 1117 aa23.27■■□□□ 1.32
SOX4-201ENST00000244745 DHX29Q7Z478 1369 aaKnown RBP23.27■■□□□ 1.31
SOX4-201ENST00000244745 CLIP2Q9UDT6 1046 aa23.26■■□□□ 1.31
SOX4-201ENST00000244745 IKQ13123 557 aaPredicted RBP23.26■■□□□ 1.31
SOX4-201ENST00000244745 TMCO3Q6UWJ1 677 aa23.26■■□□□ 1.31
SOX4-201ENST00000244745 GJB2P29033 226 aa23.26■■□□□ 1.31
SOX4-201ENST00000244745 CFAP100Q494V2 611 aa23.26■■□□□ 1.31
SOX4-201ENST00000244745 PANK2Q9BZ23 570 aa23.26■■□□□ 1.31
SOX4-201ENST00000244745 SPDYE4A6NLX3 237 aa23.26■■□□□ 1.31
SOX4-201ENST00000244745 UBXN4Q92575 508 aa23.26■■□□□ 1.31
SOX4-201ENST00000244745 NOL7Q9UMY1 257 aaKnown RBP23.26■■□□□ 1.31
SOX4-201ENST00000244745 MCM5P33992 734 aa23.26■■□□□ 1.31
SOX4-201ENST00000244745 TOM1L2Q6ZVM7 507 aa23.26■■□□□ 1.31
SOX4-201ENST00000244745 SCAND2PQ9GZW5 306 aaPredicted RBP23.26■■□□□ 1.31
SOX4-201ENST00000244745 GPATCH8Q9UKJ3 1502 aaKnown RBP23.25■■□□□ 1.31
SOX4-201ENST00000244745 STIM1Q13586 685 aa23.25■■□□□ 1.31
SOX4-201ENST00000244745 TDO2P48775 406 aa23.25■■□□□ 1.31
SOX4-201ENST00000244745 GUCY1B3Q02153 619 aa23.25■■□□□ 1.31
SOX4-201ENST00000244745 DEF6Q9H4E7 631 aa23.25■■□□□ 1.31
SOX4-201ENST00000244745 FAM193AP78312 1265 aa23.25■■□□□ 1.31
SOX4-201ENST00000244745 KLHL40Q2TBA0 621 aa23.25■■□□□ 1.31
SOX4-201ENST00000244745 CCAR1Q8IX12 1150 aaKnown RBP23.25■■□□□ 1.31
SOX4-201ENST00000244745 MYD88Q99836 296 aa23.25■■□□□ 1.31
SOX4-201ENST00000244745 KRT18P05783 430 aaKnown RBP23.25■■□□□ 1.31
SOX4-201ENST00000244745 CCDC102AQ96A19 550 aa23.25■■□□□ 1.31
SOX4-201ENST00000244745 ADCY5O95622 1261 aa23.24■■□□□ 1.31
SOX4-201ENST00000244745 IL16Q14005 1332 aa23.24■■□□□ 1.31
SOX4-201ENST00000244745 URB2Q14146 1524 aaKnown RBP23.24■■□□□ 1.31
SOX4-201ENST00000244745 TNNQ9UQP3 1299 aa23.23■■□□□ 1.31
SOX4-201ENST00000244745 CFAP43Q8NDM7 1665 aa23.23■■□□□ 1.31
SOX4-201ENST00000244745 CCDC181Q5TID7 509 aa23.23■■□□□ 1.31
SOX4-201ENST00000244745 ANO10Q9NW15 660 aa23.23■■□□□ 1.31
SOX4-201ENST00000244745 ODF2Q5BJF6 829 aa23.23■■□□□ 1.31
SOX4-201ENST00000244745 TANGO6Q9C0B7 1094 aa23.22■■□□□ 1.31
SOX4-201ENST00000244745 STX6O43752 255 aa23.22■■□□□ 1.31
SOX4-201ENST00000244745 TNNT1P13805 278 aa23.22■■□□□ 1.31
SOX4-201ENST00000244745 FLIIQ13045 1269 aa23.22■■□□□ 1.31
SOX4-201ENST00000244745 MPHOSPH8Q99549 860 aa23.22■■□□□ 1.31
SOX4-201ENST00000244745 RAPGEF6Q8TEU7 1601 aa23.22■■□□□ 1.31
SOX4-201ENST00000244745 IDH1O75874 414 aaKnown RBP23.22■■□□□ 1.31
SOX4-201ENST00000244745 UBAC1Q9BSL1 405 aa23.22■■□□□ 1.31
SOX4-201ENST00000244745 MYO6Q9UM54 1294 aa23.22■■□□□ 1.31
SOX4-201ENST00000244745 ZFYVE27Q5T4F4 411 aa23.21■■□□□ 1.31
SOX4-201ENST00000244745 PRAG1Q86YV5 1406 aa23.21■■□□□ 1.31
SOX4-201ENST00000244745 DNAAF4Q8WXU2 420 aa23.21■■□□□ 1.31
SOX4-201ENST00000244745 U3KPZ7 1027 aaPredicted RBP23.21■■□□□ 1.31
SOX4-201ENST00000244745 ITSN2Q9NZM3 1697 aa23.21■■□□□ 1.31
SOX4-201ENST00000244745 PIBF1Q8WXW3 757 aa23.21■■□□□ 1.31
SOX4-201ENST00000244745 C14orf93Q9H972 538 aaKnown RBP23.21■■□□□ 1.31
SOX4-201ENST00000244745 C16orf45Q96MC5 204 aaPredicted RBP23.2■■□□□ 1.31
SOX4-201ENST00000244745 ANKRD36BQ8N2N9 1353 aa23.2■■□□□ 1.3
SOX4-201ENST00000244745 KIF2AO00139 706 aaPredicted RBP23.2■■□□□ 1.3
SOX4-201ENST00000244745 SFPQP23246 707 aaKnown RBP eCLIP23.2■■□□□ 1.3
SOX4-201ENST00000244745 CALCOCO1Q9P1Z2 691 aa23.2■■□□□ 1.3
SOX4-201ENST00000244745 WASLO00401 505 aaPredicted RBP23.2■■□□□ 1.3
SOX4-201ENST00000244745 WASF1Q92558 559 aa23.2■■□□□ 1.3
SOX4-201ENST00000244745 CTTNBP2Q8WZ74 1663 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms