RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 HOXB7P09629 217 aa23.94■■□□□ 1.42
YBX3-201ENST00000228251 EIF4A1P60842 406 aaKnown RBP23.94■■□□□ 1.42
YBX3-201ENST00000228251 DAXXQ9UER7 740 aaPredicted RBP23.93■■□□□ 1.42
YBX3-201ENST00000228251 ERBB3P21860 1342 aa23.93■■□□□ 1.42
YBX3-201ENST00000228251 ZBTB7CA1YPR0 619 aa23.93■■□□□ 1.42
YBX3-201ENST00000228251 ATF3P18847 181 aa23.93■■□□□ 1.42
YBX3-201ENST00000228251 ZNF530Q6P9A1 599 aaPredicted RBP23.93■■□□□ 1.42
YBX3-201ENST00000228251 STRCQ7RTU9 1775 aa23.93■■□□□ 1.42
YBX3-201ENST00000228251 KDM4FA0A1W2PPD8 638 aa23.92■■□□□ 1.42
YBX3-201ENST00000228251 USP35Q9P2H5 1018 aa23.92■■□□□ 1.42
YBX3-201ENST00000228251 SCN11AQ9UI33 1791 aa23.92■■□□□ 1.42
YBX3-201ENST00000228251 PLEKHM2Q8IWE5 1019 aa23.91■■□□□ 1.42
YBX3-201ENST00000228251 C22orf23Q9BZE7 217 aa23.91■■□□□ 1.42
YBX3-201ENST00000228251 LMOD2Q6P5Q4 547 aa23.91■■□□□ 1.42
YBX3-201ENST00000228251 HEG1Q9ULI3 1381 aa23.91■■□□□ 1.42
YBX3-201ENST00000228251 TNS3Q68CZ2 1445 aa23.9■■□□□ 1.42
YBX3-201ENST00000228251 RNMTO43148 476 aaKnown RBP23.9■■□□□ 1.42
YBX3-201ENST00000228251 MFAP1P55081 439 aaKnown RBP23.9■■□□□ 1.42
YBX3-201ENST00000228251 TUBGCP6Q96RT7 1819 aa23.9■■□□□ 1.42
YBX3-201ENST00000228251 BECN1Q14457 450 aa23.89■■□□□ 1.42
YBX3-201ENST00000228251 SLC4A10Q6U841 1118 aa23.89■■□□□ 1.42
YBX3-201ENST00000228251 RBM25P49756 843 aaKnown RBP23.88■■□□□ 1.41
YBX3-201ENST00000228251 FKBP5Q13451 457 aaPredicted RBP23.88■■□□□ 1.41
YBX3-201ENST00000228251 HDGFL1Q5TGJ6 251 aa23.88■■□□□ 1.41
YBX3-201ENST00000228251 GSPT1P15170 499 aaKnown RBP23.88■■□□□ 1.41
YBX3-201ENST00000228251 CADPS2Q86UW7 1296 aa23.88■■□□□ 1.41
YBX3-201ENST00000228251 PLEKHG2Q9H7P9 1386 aa23.87■■□□□ 1.41
YBX3-201ENST00000228251 KCNQ3O43525 872 aa23.87■■□□□ 1.41
YBX3-201ENST00000228251 NECTIN2Q92692 538 aa23.87■■□□□ 1.41
YBX3-201ENST00000228251 NPHP3Q7Z494 1330 aa23.87■■□□□ 1.41
YBX3-201ENST00000228251 MPRIPQ6WCQ1 1025 aa23.86■■□□□ 1.41
YBX3-201ENST00000228251 TBC1D2Q9BYX2 928 aa23.86■■□□□ 1.41
YBX3-201ENST00000228251 PKD1L3Q7Z443 1732 aa23.86■■□□□ 1.41
YBX3-201ENST00000228251 GNAI2P04899 355 aa23.86■■□□□ 1.41
YBX3-201ENST00000228251 DDX17Q92841 729 aaKnown RBP23.86■■□□□ 1.41
YBX3-201ENST00000228251 HMMRO75330 724 aa23.85■■□□□ 1.41
YBX3-201ENST00000228251 GNAI3P08754 354 aa23.84■■□□□ 1.41
YBX3-201ENST00000228251 HSPA2P54652 639 aa23.84■■□□□ 1.41
YBX3-201ENST00000228251 TEFQ10587 303 aa23.84■■□□□ 1.41
YBX3-201ENST00000228251 TTC22Q5TAA0 569 aa23.84■■□□□ 1.41
YBX3-201ENST00000228251 TBC1D9Q6ZT07 1266 aa23.84■■□□□ 1.41
YBX3-201ENST00000228251 PHAXQ9H814 394 aaKnown RBP23.84■■□□□ 1.41
YBX3-201ENST00000228251 ZC3H6P61129 1189 aaKnown RBP23.83■■□□□ 1.41
YBX3-201ENST00000228251 C16orf71Q8IYS4 520 aaPredicted RBP23.83■■□□□ 1.41
YBX3-201ENST00000228251 BTBD11A6QL63 1104 aa23.83■■□□□ 1.4
YBX3-201ENST00000228251 RTL5Q5HYW3 569 aaPredicted RBP23.83■■□□□ 1.4
YBX3-201ENST00000228251 C1orf141Q5JVX7 400 aa23.83■■□□□ 1.4
YBX3-201ENST00000228251 ANTXR1Q9H6X2 564 aa23.83■■□□□ 1.4
YBX3-201ENST00000228251 SPATA31A3Q5VYP0 1347 aa23.83■■□□□ 1.4
YBX3-201ENST00000228251 NFKBIBQ15653 356 aa23.82■■□□□ 1.4
YBX3-201ENST00000228251 OTUD7AQ8TE49 926 aaPredicted RBP23.82■■□□□ 1.4
YBX3-201ENST00000228251 CHMP4AQ9BY43 222 aa23.82■■□□□ 1.4
YBX3-201ENST00000228251 MEGF6O75095 1541 aa23.81■■□□□ 1.4
YBX3-201ENST00000228251 CPDO75976 1380 aa23.81■■□□□ 1.4
YBX3-201ENST00000228251 PLEKHG5O94827 1062 aa23.81■■□□□ 1.4
YBX3-201ENST00000228251 USP44Q9H0E7 712 aa23.81■■□□□ 1.4
YBX3-201ENST00000228251 KDM6AO15550 1401 aaPredicted RBP23.8■■□□□ 1.4
YBX3-201ENST00000228251 CDC45O75419 566 aa23.8■■□□□ 1.4
YBX3-201ENST00000228251 ATP8B2P98198 1209 aa23.8■■□□□ 1.4
YBX3-201ENST00000228251 C5P01031 1676 aa23.8■■□□□ 1.4
YBX3-201ENST00000228251 MRC1P22897 1456 aa23.79■■□□□ 1.4
YBX3-201ENST00000228251 SALL3Q9BXA9 1300 aa23.79■■□□□ 1.4
YBX3-201ENST00000228251 SMARCA5O60264 1052 aaPredicted RBP23.79■■□□□ 1.4
YBX3-201ENST00000228251 CHPF2Q9P2E5 772 aa23.79■■□□□ 1.4
YBX3-201ENST00000228251 OSBPL3Q9H4L5 887 aa23.78■■□□□ 1.4
YBX3-201ENST00000228251 GIGYF1O75420 1035 aaPredicted RBP23.78■■□□□ 1.4
YBX3-201ENST00000228251 KIF2CQ99661 725 aa23.78■■□□□ 1.4
YBX3-201ENST00000228251 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP23.78■■□□□ 1.41e-6■■□□□ 12.5
YBX3-201ENST00000228251 PARP4Q9UKK3 1724 aaKnown RBP23.77■■□□□ 1.4
YBX3-201ENST00000228251 ADCY9O60503 1353 aa23.77■■□□□ 1.4
YBX3-201ENST00000228251 ABCA3Q99758 1704 aa23.76■■□□□ 1.39
YBX3-201ENST00000228251 PNMA6EA0A0J9YXQ4 647 aa23.76■■□□□ 1.39
YBX3-201ENST00000228251 EIF2S2P20042 333 aaKnown RBP23.76■■□□□ 1.39
YBX3-201ENST00000228251 IBTKQ9P2D0 1353 aaPredicted RBP23.76■■□□□ 1.39
YBX3-201ENST00000228251 LRRFIP2Q9Y608 721 aaKnown RBP23.75■■□□□ 1.39
YBX3-201ENST00000228251 BEND3Q5T5X7 828 aa23.75■■□□□ 1.39
YBX3-201ENST00000228251 DEKP35659 375 aaKnown RBP23.74■■□□□ 1.39
YBX3-201ENST00000228251 BRINP3Q76B58 766 aa23.74■■□□□ 1.39
YBX3-201ENST00000228251 CABLES1Q8TDN4 633 aa23.74■■□□□ 1.39
YBX3-201ENST00000228251 SNX21Q969T3 373 aa23.74■■□□□ 1.39
YBX3-201ENST00000228251 SRCIN1Q9C0H9 1055 aa23.73■■□□□ 1.39
YBX3-201ENST00000228251 DBF4Q9UBU7 674 aaPredicted RBP23.73■■□□□ 1.39
YBX3-201ENST00000228251 SSH3Q8TE77 659 aa23.73■■□□□ 1.39
YBX3-201ENST00000228251 DNAAF4Q8WXU2 420 aa23.73■■□□□ 1.39
YBX3-201ENST00000228251 RAPGEF4Q8WZA2 1011 aa23.73■■□□□ 1.39
YBX3-201ENST00000228251 GLI3P10071 1580 aa23.72■■□□□ 1.39
YBX3-201ENST00000228251 UBTFL1P0CB47 393 aaPredicted RBP23.72■■□□□ 1.39
YBX3-201ENST00000228251 PHKG2P15735 406 aa23.72■■□□□ 1.39
YBX3-201ENST00000228251 SDSP20132 328 aa23.72■■□□□ 1.39
YBX3-201ENST00000228251 NLRP2Q9NX02 1062 aa23.72■■□□□ 1.39
YBX3-201ENST00000228251 PI4KAP2A4QPH2 592 aa23.71■■□□□ 1.39
YBX3-201ENST00000228251 POLA2Q14181 598 aa23.71■■□□□ 1.39
YBX3-201ENST00000228251 PI4KAP1Q8N8J0 262 aa23.71■■□□□ 1.39
YBX3-201ENST00000228251 EXOC6BQ9Y2D4 811 aa23.71■■□□□ 1.39
YBX3-201ENST00000228251 TATP17735 454 aaPredicted RBP23.7■■□□□ 1.39
YBX3-201ENST00000228251 PDE1AP54750 535 aa23.7■■□□□ 1.39
YBX3-201ENST00000228251 ANXA1P04083 346 aa23.7■■□□□ 1.38
YBX3-201ENST00000228251 SLC52A2Q9HAB3 445 aa23.7■■□□□ 1.38
YBX3-201ENST00000228251 SOS2Q07890 1332 aaPredicted RBP23.69■■□□□ 1.38
YBX3-201ENST00000228251 APBB1O00213 710 aa23.69■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms