RNA–Protein interactions for RNA: ENST00000222823.8

NOD1-201, Transcript of nucleotide binding oligomerization domain containing 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOD1, Length 4,499 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1-201ENST00000222823 FKBP4Q02790 459 aaKnown RBP eCLIP13.68□□□□□ -0.22
NOD1-201ENST00000222823 IKQ13123 557 aaPredicted RBP13.68□□□□□ -0.22
NOD1-201ENST00000222823 LARP1BQ659C4 914 aaKnown RBP13.68□□□□□ -0.22
NOD1-201ENST00000222823 CWC27Q6UX04 472 aaKnown RBP13.68□□□□□ -0.22
NOD1-201ENST00000222823 AEBP1Q8IUX7 1158 aa13.68□□□□□ -0.22
NOD1-201ENST00000222823 TBC1D32Q96NH3 1257 aa13.68□□□□□ -0.22
NOD1-201ENST00000222823 BRPF3Q9ULD4 1205 aa13.68□□□□□ -0.22
NOD1-201ENST00000222823 KRT85P78386 507 aa13.68□□□□□ -0.22
NOD1-201ENST00000222823 PDILTQ8N807 584 aa13.68□□□□□ -0.22
NOD1-201ENST00000222823 JMYQ8N9B5 988 aa13.68□□□□□ -0.22
NOD1-201ENST00000222823 ERVK-7P63135 1459 aa13.67□□□□□ -0.22
NOD1-201ENST00000222823 OFD1O75665 1012 aa13.67□□□□□ -0.22
NOD1-201ENST00000222823 PRM3Q9NNZ6 103 aa13.67□□□□□ -0.22
NOD1-201ENST00000222823 CIZ1Q9ULV3 898 aaPredicted RBP13.67□□□□□ -0.22
NOD1-201ENST00000222823 EMILIN1Q9Y6C2 1016 aa13.67□□□□□ -0.22
NOD1-201ENST00000222823 TRMT2AQ8IZ69 625 aaKnown RBP13.67□□□□□ -0.22
NOD1-201ENST00000222823 SHROOM2Q13796 1616 aa13.67□□□□□ -0.22
NOD1-201ENST00000222823 RLBP1P12271 317 aa13.66□□□□□ -0.22
NOD1-201ENST00000222823 KLHL34Q8N239 644 aa13.66□□□□□ -0.22
NOD1-201ENST00000222823 R3HCC1Q9Y3T6 440 aaKnown RBP13.66□□□□□ -0.22
NOD1-201ENST00000222823 NAP1L1P55209 391 aaKnown RBP13.66□□□□□ -0.22
NOD1-201ENST00000222823 TRIM22Q8IYM9 498 aa13.66□□□□□ -0.22
NOD1-201ENST00000222823 IL27Q8NEV9 243 aa13.66□□□□□ -0.22
NOD1-201ENST00000222823 DMRT2Q9Y5R5 561 aa13.66□□□□□ -0.22
NOD1-201ENST00000222823 A0A1W2PP64 1363 aa13.66□□□□□ -0.22
NOD1-201ENST00000222823 ZFYVE16Q7Z3T8 1539 aa13.66□□□□□ -0.22
NOD1-201ENST00000222823 ARAP3Q8WWN8 1544 aa13.66□□□□□ -0.22
NOD1-201ENST00000222823 KIF1BPQ96EK5 621 aa13.66□□□□□ -0.22
NOD1-201ENST00000222823 JAKMIP1Q96N16 626 aaKnown RBP13.66□□□□□ -0.22
NOD1-201ENST00000222823 TBC1D2Q9BYX2 928 aa13.66□□□□□ -0.22
NOD1-201ENST00000222823 TET3O43151 1660 aa13.65□□□□□ -0.22
NOD1-201ENST00000222823 MCM4P33991 863 aa13.65□□□□□ -0.22
NOD1-201ENST00000222823 ME1P48163 572 aa13.65□□□□□ -0.22
NOD1-201ENST00000222823 TAF7Q15545 349 aaPredicted RBP13.65□□□□□ -0.22
NOD1-201ENST00000222823 NPATQ14207 1427 aa13.65□□□□□ -0.22
NOD1-201ENST00000222823 NUTM2BA6NNL0 878 aaPredicted RBP13.65□□□□□ -0.22
NOD1-201ENST00000222823 NUTM2EB1AL46 878 aaPredicted RBP13.65□□□□□ -0.22
NOD1-201ENST00000222823 TXLNAP40222 546 aa13.65□□□□□ -0.22
NOD1-201ENST00000222823 ZSCAN25Q6NSZ9 544 aa13.65□□□□□ -0.22
NOD1-201ENST00000222823 NUTM2AQ8IVF1 878 aaPredicted RBP13.65□□□□□ -0.22
NOD1-201ENST00000222823 LAMC1P11047 1609 aa13.65□□□□□ -0.23
NOD1-201ENST00000222823 SMC2O95347 1197 aa13.64□□□□□ -0.23
NOD1-201ENST00000222823 ARGLU1Q9NWB6 273 aaPredicted RBP13.64□□□□□ -0.23
NOD1-201ENST00000222823 CTNNA3Q9UI47 895 aa13.64□□□□□ -0.23
NOD1-201ENST00000222823 PTCD1O75127 700 aaKnown RBP13.64□□□□□ -0.23
NOD1-201ENST00000222823 CCDC192P0DO97 292 aa13.64□□□□□ -0.23
NOD1-201ENST00000222823 KRT32Q14532 448 aa13.64□□□□□ -0.23
NOD1-201ENST00000222823 NUTM1Q86Y26 1132 aa13.64□□□□□ -0.23
NOD1-201ENST00000222823 ZSCAN31Q96LW9 406 aaPredicted RBP13.64□□□□□ -0.23
NOD1-201ENST00000222823 GLRX3O76003 335 aaKnown RBP13.64□□□□□ -0.23
NOD1-201ENST00000222823 ARHGAP45Q92619 1136 aa13.64□□□□□ -0.23
NOD1-201ENST00000222823 PDRG1Q9NUG6 133 aa13.64□□□□□ -0.23
NOD1-201ENST00000222823 ERCC6L2Q5T890 1561 aa13.64□□□□□ -0.23
NOD1-201ENST00000222823 FOXO3O43524 673 aa13.63□□□□□ -0.23
NOD1-201ENST00000222823 CCDC85AQ96PX6 553 aaPredicted RBP13.63□□□□□ -0.23
NOD1-201ENST00000222823 AMOTL2Q9Y2J4 779 aa13.63□□□□□ -0.23
NOD1-201ENST00000222823 VSIG10Q8N0Z9 540 aa13.63□□□□□ -0.23
NOD1-201ENST00000222823 TNNQ9UQP3 1299 aa13.63□□□□□ -0.23
NOD1-201ENST00000222823 ZFYVE9O95405 1425 aa13.63□□□□□ -0.23
NOD1-201ENST00000222823 MX1P20591 662 aa13.63□□□□□ -0.23
NOD1-201ENST00000222823 FILIP1LQ4L180 1135 aa13.63□□□□□ -0.23
NOD1-201ENST00000222823 STK11IPQ8N1F8 1099 aa13.63□□□□□ -0.23
NOD1-201ENST00000222823 CCDC173Q0VFZ6 552 aa13.62□□□□□ -0.23
NOD1-201ENST00000222823 LARP1Q6PKG0 1096 aaKnown RBP13.62□□□□□ -0.23
NOD1-201ENST00000222823 PHF8Q9UPP1 1060 aa13.62□□□□□ -0.23
NOD1-201ENST00000222823 EPS15P42566 896 aa13.62□□□□□ -0.23
NOD1-201ENST00000222823 ZNF771Q7L3S4 317 aaPredicted RBP13.62□□□□□ -0.23
NOD1-201ENST00000222823 TNMDQ9H2S6 317 aa13.62□□□□□ -0.23
NOD1-201ENST00000222823 UPF3BQ9BZI7 483 aaKnown RBP13.62□□□□□ -0.23
NOD1-201ENST00000222823 F6X3S4 739 aa13.62□□□□□ -0.23
NOD1-201ENST00000222823 TEX35Q5T0J7 233 aa13.62□□□□□ -0.23
NOD1-201ENST00000222823 YTHDC2Q9H6S0 1430 aaKnown RBP13.62□□□□□ -0.23
NOD1-201ENST00000222823 KIF1BO60333 1816 aa13.62□□□□□ -0.23
NOD1-201ENST00000222823 AMOTQ4VCS5 1084 aa13.61□□□□□ -0.23
NOD1-201ENST00000222823 BMP2KLQ5H9B9 411 aa13.61□□□□□ -0.23
NOD1-201ENST00000222823 STARD3NLO95772 234 aa13.61□□□□□ -0.23
NOD1-201ENST00000222823 CDK5RAP3Q96JB5 506 aa13.61□□□□□ -0.23
NOD1-201ENST00000222823 BCL11BQ9C0K0 894 aaPredicted RBP13.61□□□□□ -0.23
NOD1-201ENST00000222823 UGGT1Q9NYU2 1555 aa13.61□□□□□ -0.23
NOD1-201ENST00000222823 SMARCA5O60264 1052 aaPredicted RBP13.61□□□□□ -0.23
NOD1-201ENST00000222823 CT47A1Q5JQC4 288 aaPredicted RBP13.61□□□□□ -0.23
NOD1-201ENST00000222823 USHBP1Q8N6Y0 703 aa13.61□□□□□ -0.23
NOD1-201ENST00000222823 NUP133Q8WUM0 1156 aa13.61□□□□□ -0.23
NOD1-201ENST00000222823 CCDC69A6NI79 296 aa13.6□□□□□ -0.23
NOD1-201ENST00000222823 CFAP65Q6ZU64 1925 aaKnown RBP13.6□□□□□ -0.23
NOD1-201ENST00000222823 RAB11FIP3O75154 756 aa13.6□□□□□ -0.23
NOD1-201ENST00000222823 IDH1O75874 414 aaKnown RBP13.6□□□□□ -0.23
NOD1-201ENST00000222823 POLKQ9UBT6 870 aa13.6□□□□□ -0.23
NOD1-201ENST00000222823 BRPF1P55201 1214 aaPredicted RBP13.6□□□□□ -0.23
NOD1-201ENST00000222823 ATP2B2Q01814 1243 aa13.6□□□□□ -0.23
NOD1-201ENST00000222823 NUCB1Q02818 461 aa13.6□□□□□ -0.23
NOD1-201ENST00000222823 SPC24Q8NBT2 197 aa13.6□□□□□ -0.23
NOD1-201ENST00000222823 MBIPQ9NS73 344 aa13.6□□□□□ -0.23
NOD1-201ENST00000222823 CLTCL1P53675 1640 aa13.6□□□□□ -0.23
NOD1-201ENST00000222823 TDO2P48775 406 aa13.6□□□□□ -0.23
NOD1-201ENST00000222823 GRPEL1Q9HAV7 217 aa13.6□□□□□ -0.23
NOD1-201ENST00000222823 CFAP45Q9UL16 551 aa13.59□□□□□ -0.23
NOD1-201ENST00000222823 MADDQ8WXG6 1647 aa13.59□□□□□ -0.23
NOD1-201ENST00000222823 PDIA4P13667 645 aaKnown RBP13.59□□□□□ -0.23
NOD1-201ENST00000222823 PIP4K2AP48426 406 aaPredicted RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms