Protein–RNA interactions for Protein: P53618

COPB1, Coatomer subunit beta, humanhuman

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1P53618 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COPB1P53618 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC20.59■□□□□ 0.89
COPB1P53618 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COPB1P53618 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COPB1P53618 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COPB1P53618 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COPB1P53618 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
COPB1P53618 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COPB1P53618 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COPB1P53618 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.59■□□□□ 0.89
COPB1P53618 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC20.59■□□□□ 0.89
COPB1P53618 CD276-201ENST00000318424 2738 ntTSL 5 BASIC20.59■□□□□ 0.89
COPB1P53618 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COPB1P53618 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COPB1P53618 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.59■□□□□ 0.89
COPB1P53618 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.59■□□□□ 0.89
COPB1P53618 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
COPB1P53618 MMAB-206ENST00000540016 945 ntTSL 3 BASIC20.59■□□□□ 0.89
COPB1P53618 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.59■□□□□ 0.89
COPB1P53618 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.59■□□□□ 0.89
COPB1P53618 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COPB1P53618 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.59■□□□□ 0.89
COPB1P53618 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
COPB1P53618 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COPB1P53618 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC20.59■□□□□ 0.89
COPB1P53618 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20.59■□□□□ 0.89
COPB1P53618 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COPB1P53618 AL162741.1-201ENST00000565563 1558 ntBASIC20.59■□□□□ 0.89
COPB1P53618 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COPB1P53618 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COPB1P53618 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
COPB1P53618 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC20.58■□□□□ 0.89
COPB1P53618 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COPB1P53618 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COPB1P53618 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COPB1P53618 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COPB1P53618 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.58■□□□□ 0.89
COPB1P53618 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
COPB1P53618 AC004980.1-204ENST00000429707 299 ntBASIC20.58■□□□□ 0.89
COPB1P53618 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC20.58■□□□□ 0.89
COPB1P53618 AC124016.1-201ENST00000609552 612 ntBASIC20.58■□□□□ 0.89
COPB1P53618 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.58■□□□□ 0.89
COPB1P53618 AC068880.1-201ENST00000507289 2297 ntBASIC20.58■□□□□ 0.88
COPB1P53618 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC20.58■□□□□ 0.88
COPB1P53618 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COPB1P53618 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC20.58■□□□□ 0.88
COPB1P53618 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COPB1P53618 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COPB1P53618 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC20.58■□□□□ 0.88
COPB1P53618 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
COPB1P53618 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COPB1P53618 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COPB1P53618 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COPB1P53618 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC20.57■□□□□ 0.88
COPB1P53618 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COPB1P53618 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COPB1P53618 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
COPB1P53618 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.57■□□□□ 0.88
COPB1P53618 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.57■□□□□ 0.88
COPB1P53618 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COPB1P53618 KRT8P3-201ENST00000519669 1449 ntBASIC20.57■□□□□ 0.88
COPB1P53618 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC20.57■□□□□ 0.88
COPB1P53618 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC20.57■□□□□ 0.88
COPB1P53618 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COPB1P53618 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COPB1P53618 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COPB1P53618 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPB1P53618 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COPB1P53618 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC20.56■□□□□ 0.88
COPB1P53618 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPB1P53618 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC20.56■□□□□ 0.88
COPB1P53618 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPB1P53618 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC20.56■□□□□ 0.88
COPB1P53618 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPB1P53618 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPB1P53618 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC20.56■□□□□ 0.88
COPB1P53618 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPB1P53618 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COPB1P53618 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPB1P53618 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
COPB1P53618 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
COPB1P53618 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.56■□□□□ 0.88
COPB1P53618 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.56■□□□□ 0.88
COPB1P53618 AC131212.4-201ENST00000623606 975 ntBASIC20.56■□□□□ 0.88
COPB1P53618 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.56■□□□□ 0.88
COPB1P53618 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
COPB1P53618 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.56■□□□□ 0.88
COPB1P53618 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COPB1P53618 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
COPB1P53618 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPB1P53618 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPB1P53618 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPB1P53618 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPB1P53618 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
COPB1P53618 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPB1P53618 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPB1P53618 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COPB1P53618 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
COPB1P53618 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.55■□□□□ 0.88
COPB1P53618 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 121.7 ms