Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 RNU6-158P-201ENST00000517104 100 ntBASIC-1.59□□□□□ -2.66
CCDC43Q96MW1 MIR382-201ENST00000637119 76 ntBASIC-1.59□□□□□ -2.66
CCDC43Q96MW1 RNU6-382P-201ENST00000365181 106 ntBASIC-1.6□□□□□ -2.67
CCDC43Q96MW1 MTATP6P29-201ENST00000415057 132 ntBASIC-1.6□□□□□ -2.67
CCDC43Q96MW1 MIR4464-201ENST00000580818 92 ntBASIC-1.6□□□□□ -2.67
CCDC43Q96MW1 AC012531.4-201ENST00000616509 177 ntBASIC-1.6□□□□□ -2.67
CCDC43Q96MW1 SCARNA18B-201ENST00000458806 135 ntBASIC-1.61□□□□□ -2.67
CCDC43Q96MW1 U4.2-201ENST00000618561 85 ntBASIC-1.61□□□□□ -2.67
CCDC43Q96MW1 Y_RNA.10-201ENST00000362371 110 ntBASIC-1.62□□□□□ -2.67
CCDC43Q96MW1 SNORD114-17-201ENST00000364699 75 ntBASIC-1.62□□□□□ -2.67
CCDC43Q96MW1 Y_RNA.343-201ENST00000365354 112 ntBASIC-1.62□□□□□ -2.67
CCDC43Q96MW1 RNU6-260P-201ENST00000384092 107 ntBASIC-1.62□□□□□ -2.67
CCDC43Q96MW1 RNA5SP147-201ENST00000516493 109 ntBASIC-1.62□□□□□ -2.67
CCDC43Q96MW1 AC006254.2-201ENST00000603259 279 ntBASIC-1.62□□□□□ -2.67
CCDC43Q96MW1 AC099654.10-201ENST00000640395 161 ntBASIC-1.62□□□□□ -2.67
CCDC43Q96MW1 MIR203A-201ENST00000384836 110 ntBASIC-1.63□□□□□ -2.67
CCDC43Q96MW1 RNU7-200P-201ENST00000516105 62 ntBASIC-1.63□□□□□ -2.67
CCDC43Q96MW1 SNORD33.1-201ENST00000516213 88 ntBASIC-1.63□□□□□ -2.67
CCDC43Q96MW1 RNU6-971P-201ENST00000516920 106 ntBASIC-1.63□□□□□ -2.67
CCDC43Q96MW1 AL353803.5-201ENST00000599815 141 ntBASIC-1.63□□□□□ -2.67
CCDC43Q96MW1 MIR4773-1-201ENST00000637203 78 ntBASIC-1.63□□□□□ -2.67
CCDC43Q96MW1 MIR548I1-201ENST00000408810 149 ntBASIC-1.64□□□□□ -2.67
CCDC43Q96MW1 snoU13.17-201ENST00000458802 104 ntBASIC-1.64□□□□□ -2.67
CCDC43Q96MW1 RNA5SP180-201ENST00000516181 101 ntBASIC-1.64□□□□□ -2.67
CCDC43Q96MW1 MIR4306-201ENST00000583390 91 ntBASIC-1.64□□□□□ -2.67
CCDC43Q96MW1 MIR3914-2-201ENST00000637339 95 ntBASIC-1.64□□□□□ -2.67
CCDC43Q96MW1 RNU6-1290P-201ENST00000362957 109 ntBASIC-1.65□□□□□ -2.67
CCDC43Q96MW1 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.65□□□□□ -2.67
CCDC43Q96MW1 MIR548A3-201ENST00000385297 97 ntBASIC-1.65□□□□□ -2.67
CCDC43Q96MW1 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.65□□□□□ -2.67
CCDC43Q96MW1 MIR4441-201ENST00000582623 100 ntBASIC-1.65□□□□□ -2.67
CCDC43Q96MW1 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.65□□□□□ -2.67
CCDC43Q96MW1 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.65□□□□□ -2.67
CCDC43Q96MW1 SNORD114-3-201ENST00000364969 75 ntBASIC-1.67□□□□□ -2.68
CCDC43Q96MW1 TRAJ30-201ENST00000390507 57 ntAPPRIS P1 BASIC-1.67□□□□□ -2.68
CCDC43Q96MW1 RNU6-1246P-201ENST00000391064 107 ntBASIC-1.67□□□□□ -2.68
CCDC43Q96MW1 MIR6509-201ENST00000614603 85 ntBASIC-1.67□□□□□ -2.68
CCDC43Q96MW1 AL445584.3-201ENST00000617173 78 ntBASIC-1.67□□□□□ -2.68
CCDC43Q96MW1 MIR6888-201ENST00000621977 67 ntBASIC-1.67□□□□□ -2.68
CCDC43Q96MW1 RNU6-824P-201ENST00000363724 104 ntBASIC-1.68□□□□□ -2.68
CCDC43Q96MW1 Y_RNA.244-201ENST00000364484 109 ntBASIC-1.68□□□□□ -2.68
CCDC43Q96MW1 RNU6-1039P-201ENST00000383931 107 ntBASIC-1.68□□□□□ -2.68
CCDC43Q96MW1 RNU6-346P-201ENST00000516288 111 ntBASIC-1.68□□□□□ -2.68
CCDC43Q96MW1 snoU83B.1-201ENST00000517136 88 ntBASIC-1.68□□□□□ -2.68
CCDC43Q96MW1 SNORA33.1-201ENST00000364957 130 ntBASIC-1.69□□□□□ -2.68
CCDC43Q96MW1 Y_RNA.712-201ENST00000517011 92 ntBASIC-1.69□□□□□ -2.68
CCDC43Q96MW1 RNU6-706P-201ENST00000517229 104 ntBASIC-1.69□□□□□ -2.68
CCDC43Q96MW1 MIR4719-201ENST00000585233 84 ntBASIC-1.69□□□□□ -2.68
CCDC43Q96MW1 SNORD58A-201ENST00000383875 65 ntBASIC-1.7□□□□□ -2.68
CCDC43Q96MW1 SNORA15B-2-201ENST00000384058 135 ntBASIC-1.7□□□□□ -2.68
CCDC43Q96MW1 SNORA15B-1-201ENST00000384334 135 ntBASIC-1.7□□□□□ -2.68
CCDC43Q96MW1 MIR1255B2-201ENST00000408618 67 ntBASIC-1.71□□□□□ -2.68
CCDC43Q96MW1 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC-1.71□□□□□ -2.68
CCDC43Q96MW1 Y_RNA.705-201ENST00000516862 110 ntBASIC-1.71□□□□□ -2.68
CCDC43Q96MW1 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC-1.71□□□□□ -2.68
CCDC43Q96MW1 RNU5F-1-201ENST00000362507 117 ntBASIC-1.72□□□□□ -2.68
CCDC43Q96MW1 RNU6-1014P-201ENST00000383940 103 ntBASIC-1.72□□□□□ -2.68
CCDC43Q96MW1 SNORA19.1-201ENST00000410656 129 ntBASIC-1.72□□□□□ -2.68
CCDC43Q96MW1 AC026421.1-201ENST00000519101 163 ntBASIC-1.72□□□□□ -2.68
CCDC43Q96MW1 RNU6-80P-201ENST00000384195 107 ntBASIC-1.73□□□□□ -2.69
CCDC43Q96MW1 RNU6-972P-201ENST00000391208 107 ntBASIC-1.73□□□□□ -2.69
CCDC43Q96MW1 AL691482.2-201ENST00000457453 84 ntBASIC-1.73□□□□□ -2.69
CCDC43Q96MW1 MIR3657-201ENST00000584818 117 ntBASIC-1.73□□□□□ -2.69
CCDC43Q96MW1 U6.95-201ENST00000636931 70 ntBASIC-1.73□□□□□ -2.69
CCDC43Q96MW1 Y_RNA.250-201ENST00000364542 110 ntBASIC-1.74□□□□□ -2.69
CCDC43Q96MW1 RNU6ATAC29P-201ENST00000408088 125 ntBASIC-1.74□□□□□ -2.69
CCDC43Q96MW1 SCARNA23-201ENST00000516060 130 ntBASIC-1.74□□□□□ -2.69
CCDC43Q96MW1 CYP3A54P-201ENST00000566950 75 ntBASIC-1.74□□□□□ -2.69
CCDC43Q96MW1 SNORA2.1-201ENST00000363089 137 ntBASIC-1.75□□□□□ -2.69
CCDC43Q96MW1 Y_RNA.281-201ENST00000364774 94 ntBASIC-1.75□□□□□ -2.69
CCDC43Q96MW1 RNU6-1157P-201ENST00000384456 106 ntBASIC-1.75□□□□□ -2.69
CCDC43Q96MW1 Y_RNA.586-201ENST00000391146 98 ntBASIC-1.75□□□□□ -2.69
CCDC43Q96MW1 RNU6-887P-201ENST00000410660 100 ntBASIC-1.75□□□□□ -2.69
CCDC43Q96MW1 MIR1246-201ENST00000636535 73 ntBASIC-1.75□□□□□ -2.69
CCDC43Q96MW1 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.76□□□□□ -2.69
CCDC43Q96MW1 MIR1207-201ENST00000408249 87 ntBASIC-1.76□□□□□ -2.69
CCDC43Q96MW1 RNU6-659P-201ENST00000516454 104 ntBASIC-1.76□□□□□ -2.69
CCDC43Q96MW1 Y_RNA.464-201ENST00000384282 110 ntBASIC-1.78□□□□□ -2.69
CCDC43Q96MW1 Y_RNA.506-201ENST00000384494 102 ntBASIC-1.78□□□□□ -2.69
CCDC43Q96MW1 RNU6-255P-201ENST00000516957 105 ntBASIC-1.78□□□□□ -2.69
CCDC43Q96MW1 RNU6-924P-201ENST00000362926 108 ntBASIC-1.79□□□□□ -2.7
CCDC43Q96MW1 RNU6-1107P-201ENST00000364817 104 ntBASIC-1.79□□□□□ -2.7
CCDC43Q96MW1 RNU6-904P-201ENST00000516206 101 ntBASIC-1.79□□□□□ -2.7
CCDC43Q96MW1 Y_RNA.698-201ENST00000516798 118 ntBASIC-1.79□□□□□ -2.7
CCDC43Q96MW1 DLEU2_3.2-201ENST00000612883 73 ntBASIC-1.79□□□□□ -2.7
CCDC43Q96MW1 Y_RNA.218-201ENST00000364218 104 ntBASIC-1.8□□□□□ -2.7
CCDC43Q96MW1 Y_RNA.558-201ENST00000384685 113 ntBASIC-1.8□□□□□ -2.7
CCDC43Q96MW1 Y_RNA.609-201ENST00000410669 89 ntBASIC-1.8□□□□□ -2.7
CCDC43Q96MW1 MIR4796-201ENST00000580742 81 ntBASIC-1.8□□□□□ -2.7
CCDC43Q96MW1 Y_RNA.71-201ENST00000362892 104 ntBASIC-1.81□□□□□ -2.7
CCDC43Q96MW1 RNU6-1064P-201ENST00000410626 104 ntBASIC-1.81□□□□□ -2.7
CCDC43Q96MW1 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.81□□□□□ -2.7
CCDC43Q96MW1 HLA-S-202ENST00000425174 53 ntBASIC-1.81□□□□□ -2.7
CCDC43Q96MW1 HOTAIRM1_3.1-201ENST00000619974 59 ntBASIC-1.81□□□□□ -2.7
CCDC43Q96MW1 RNU6-907P-201ENST00000390924 102 ntBASIC-1.82□□□□□ -2.7
CCDC43Q96MW1 Y_RNA.180-201ENST00000363867 113 ntBASIC-1.83□□□□□ -2.7
CCDC43Q96MW1 RNU6-880P-201ENST00000384526 107 ntBASIC-1.83□□□□□ -2.7
CCDC43Q96MW1 SNORA26.4-201ENST00000391188 123 ntBASIC-1.83□□□□□ -2.7
CCDC43Q96MW1 RNU6-412P-201ENST00000516434 106 ntBASIC-1.83□□□□□ -2.7
CCDC43Q96MW1 RNU6-1212P-201ENST00000517023 104 ntBASIC-1.83□□□□□ -2.7
Retrieved 100 of 98,524 protein–RNA pairs in 259.4 ms