Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AC006210.1-201ENST00000424882 111 ntBASIC0.83□□□□□ -2.28
PTCHD1Q96NR3 MIR4698-201ENST00000577795 80 ntBASIC0.83□□□□□ -2.28
PTCHD1Q96NR3 MIR3973-201ENST00000579824 107 ntBASIC0.83□□□□□ -2.28
PTCHD1Q96NR3 MIR4653-201ENST00000585107 83 ntBASIC0.83□□□□□ -2.28
PTCHD1Q96NR3 SNORA25.18-201ENST00000607153 114 ntBASIC0.83□□□□□ -2.28
PTCHD1Q96NR3 RNU6-1039P-201ENST00000383931 107 ntBASIC0.82□□□□□ -2.28
PTCHD1Q96NR3 MIR520E-201ENST00000384867 87 ntBASIC0.82□□□□□ -2.28
PTCHD1Q96NR3 RNU6-587P-201ENST00000391282 106 ntBASIC0.82□□□□□ -2.28
PTCHD1Q96NR3 RNU6-687P-201ENST00000516443 89 ntBASIC0.82□□□□□ -2.28
PTCHD1Q96NR3 RNU6-1015P-201ENST00000517121 99 ntBASIC0.82□□□□□ -2.28
PTCHD1Q96NR3 MIR4752-201ENST00000579672 72 ntBASIC0.82□□□□□ -2.28
PTCHD1Q96NR3 MIR373-201ENST00000362273 69 ntBASIC0.81□□□□□ -2.28
PTCHD1Q96NR3 SNORD110-201ENST00000408189 75 ntBASIC0.81□□□□□ -2.28
PTCHD1Q96NR3 AC018659.1-201ENST00000551083 169 ntBASIC0.81□□□□□ -2.28
PTCHD1Q96NR3 MIR6509-201ENST00000614603 85 ntBASIC0.81□□□□□ -2.28
PTCHD1Q96NR3 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
PTCHD1Q96NR3 SNORD118-201ENST00000363593 134 ntBASIC0.8□□□□□ -2.28
PTCHD1Q96NR3 RNU6-1241P-201ENST00000384536 107 ntBASIC0.8□□□□□ -2.28
PTCHD1Q96NR3 SNORA40.8-201ENST00000411034 126 ntBASIC0.8□□□□□ -2.28
PTCHD1Q96NR3 AC073261.1-201ENST00000429409 121 ntBASIC0.8□□□□□ -2.28
PTCHD1Q96NR3 AC069271.1-201ENST00000445577 156 ntBASIC0.8□□□□□ -2.28
PTCHD1Q96NR3 RPS29P1-201ENST00000465274 159 ntBASIC0.8□□□□□ -2.28
PTCHD1Q96NR3 AL590095.2-201ENST00000604136 117 ntBASIC0.8□□□□□ -2.28
PTCHD1Q96NR3 SNORA70.25-201ENST00000612741 95 ntBASIC0.8□□□□□ -2.28
PTCHD1Q96NR3 MIR154-201ENST00000385243 84 ntBASIC0.79□□□□□ -2.28
PTCHD1Q96NR3 SNORD71-201ENST00000411292 86 ntBASIC0.79□□□□□ -2.28
PTCHD1Q96NR3 MIR7111-201ENST00000619751 72 ntBASIC0.79□□□□□ -2.28
PTCHD1Q96NR3 SNORD45.1-201ENST00000363181 77 ntBASIC0.78□□□□□ -2.28
PTCHD1Q96NR3 SNORD114-4-201ENST00000363962 75 ntBASIC0.78□□□□□ -2.28
PTCHD1Q96NR3 SNORD114-2-201ENST00000363953 78 ntBASIC0.77□□□□□ -2.29
PTCHD1Q96NR3 MIR203A-201ENST00000384836 110 ntBASIC0.77□□□□□ -2.29
PTCHD1Q96NR3 MIR548J-201ENST00000408833 112 ntBASIC0.77□□□□□ -2.29
PTCHD1Q96NR3 RNU6-871P-201ENST00000516122 100 ntBASIC0.77□□□□□ -2.29
PTCHD1Q96NR3 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.77□□□□□ -2.29
PTCHD1Q96NR3 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.77□□□□□ -2.29
PTCHD1Q96NR3 Y_RNA.407-201ENST00000383986 113 ntBASIC0.76□□□□□ -2.29
PTCHD1Q96NR3 MIR518A1-201ENST00000385068 85 ntBASIC0.76□□□□□ -2.29
PTCHD1Q96NR3 MIR146A-201ENST00000385201 99 ntBASIC0.76□□□□□ -2.29
PTCHD1Q96NR3 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.76□□□□□ -2.29
PTCHD1Q96NR3 RNU6-634P-201ENST00000459134 106 ntBASIC0.76□□□□□ -2.29
PTCHD1Q96NR3 MIR4473-201ENST00000583731 91 ntBASIC0.76□□□□□ -2.29
PTCHD1Q96NR3 RNU1-29P-201ENST00000606574 126 ntBASIC0.76□□□□□ -2.29
PTCHD1Q96NR3 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.76□□□□□ -2.29
PTCHD1Q96NR3 MIR489-201ENST00000384923 84 ntBASIC0.75□□□□□ -2.29
PTCHD1Q96NR3 RNU6-351P-201ENST00000516097 100 ntBASIC0.75□□□□□ -2.29
PTCHD1Q96NR3 MIR5706-201ENST00000579841 80 ntBASIC0.75□□□□□ -2.29
PTCHD1Q96NR3 MIR6515-201ENST00000619843 57 ntBASIC0.75□□□□□ -2.29
PTCHD1Q96NR3 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC0.75□□□□□ -2.29
PTCHD1Q96NR3 RNU6-260P-201ENST00000384092 107 ntBASIC0.74□□□□□ -2.29
PTCHD1Q96NR3 RNU6-604P-201ENST00000390917 100 ntBASIC0.74□□□□□ -2.29
PTCHD1Q96NR3 RNU4-54P-201ENST00000516428 129 ntBASIC0.74□□□□□ -2.29
PTCHD1Q96NR3 CYP3A137P-201ENST00000562436 69 ntBASIC0.74□□□□□ -2.29
PTCHD1Q96NR3 MIR5000-201ENST00000577717 103 ntBASIC0.74□□□□□ -2.29
PTCHD1Q96NR3 MIR3657-201ENST00000584818 117 ntBASIC0.74□□□□□ -2.29
PTCHD1Q96NR3 MIR8053-201ENST00000613344 75 ntBASIC0.74□□□□□ -2.29
PTCHD1Q96NR3 AC022709.1-201ENST00000615967 87 ntBASIC0.74□□□□□ -2.29
PTCHD1Q96NR3 MIR6866-201ENST00000638146 69 ntBASIC0.74□□□□□ -2.29
PTCHD1Q96NR3 RNU6-990P-201ENST00000364385 104 ntBASIC0.73□□□□□ -2.29
PTCHD1Q96NR3 MIR548AE1-201ENST00000583292 70 ntBASIC0.73□□□□□ -2.29
PTCHD1Q96NR3 SNORD115-22-201ENST00000364456 82 ntBASIC0.72□□□□□ -2.29
PTCHD1Q96NR3 SNORD115-31-201ENST00000365318 82 ntBASIC0.71□□□□□ -2.3
PTCHD1Q96NR3 SNORA2A-201ENST00000383885 135 ntBASIC0.71□□□□□ -2.3
PTCHD1Q96NR3 Y_RNA.423-201ENST00000384057 113 ntBASIC0.71□□□□□ -2.3
PTCHD1Q96NR3 SNORD45A-201ENST00000384512 84 ntBASIC0.71□□□□□ -2.3
PTCHD1Q96NR3 MIR7-2-201ENST00000384970 110 ntBASIC0.71□□□□□ -2.3
PTCHD1Q96NR3 MIR652-201ENST00000385278 98 ntBASIC0.71□□□□□ -2.3
PTCHD1Q96NR3 HMGN2P22-201ENST00000427588 175 ntBASIC0.71□□□□□ -2.3
PTCHD1Q96NR3 AC098934.3-201ENST00000430450 190 ntBASIC0.71□□□□□ -2.3
PTCHD1Q96NR3 RNU6-945P-201ENST00000383947 107 ntBASIC0.7□□□□□ -2.3
PTCHD1Q96NR3 MIR598-201ENST00000384868 97 ntBASIC0.7□□□□□ -2.3
PTCHD1Q96NR3 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.7□□□□□ -2.3
PTCHD1Q96NR3 RNU6-229P-201ENST00000516614 102 ntBASIC0.7□□□□□ -2.3
PTCHD1Q96NR3 MIR6835-201ENST00000621552 64 ntBASIC0.7□□□□□ -2.3
PTCHD1Q96NR3 uc_338.10-201ENST00000621872 182 ntBASIC0.7□□□□□ -2.3
PTCHD1Q96NR3 SNORA2.1-201ENST00000363089 137 ntBASIC0.69□□□□□ -2.3
PTCHD1Q96NR3 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
PTCHD1Q96NR3 AC114801.3-201ENST00000510231 177 ntBASIC0.69□□□□□ -2.3
PTCHD1Q96NR3 SCARNA17.3-201ENST00000516381 125 ntBASIC0.69□□□□□ -2.3
PTCHD1Q96NR3 U7.6-201ENST00000610841 64 ntBASIC0.69□□□□□ -2.3
PTCHD1Q96NR3 Y_RNA.125-201ENST00000363371 111 ntBASIC0.68□□□□□ -2.3
PTCHD1Q96NR3 RNU6-895P-201ENST00000384125 103 ntBASIC0.68□□□□□ -2.3
PTCHD1Q96NR3 RNU6-881P-201ENST00000516813 102 ntBASIC0.68□□□□□ -2.3
PTCHD1Q96NR3 SNORA40.17-201ENST00000517256 115 ntBASIC0.68□□□□□ -2.3
PTCHD1Q96NR3 RNU6-540P-201ENST00000384622 101 ntBASIC0.67□□□□□ -2.3
PTCHD1Q96NR3 RNA5SP147-201ENST00000516493 109 ntBASIC0.67□□□□□ -2.3
PTCHD1Q96NR3 MIR6755-201ENST00000619993 66 ntBASIC0.67□□□□□ -2.3
PTCHD1Q96NR3 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.66□□□□□ -2.3
PTCHD1Q96NR3 SNORD113.1-201ENST00000363280 73 ntBASIC0.66□□□□□ -2.3
PTCHD1Q96NR3 RNU6-848P-201ENST00000515948 107 ntBASIC0.66□□□□□ -2.3
PTCHD1Q96NR3 RNU6-617P-201ENST00000516147 107 ntBASIC0.66□□□□□ -2.3
PTCHD1Q96NR3 RNU6-473P-201ENST00000516164 107 ntBASIC0.66□□□□□ -2.3
PTCHD1Q96NR3 RNU6-1049P-201ENST00000516414 107 ntBASIC0.66□□□□□ -2.3
PTCHD1Q96NR3 MIR508-201ENST00000384857 115 ntBASIC0.65□□□□□ -2.31
PTCHD1Q96NR3 SNORD30.1-201ENST00000391309 70 ntBASIC0.65□□□□□ -2.31
PTCHD1Q96NR3 RNU6-1232P-201ENST00000516299 86 ntBASIC0.65□□□□□ -2.31
PTCHD1Q96NR3 RNU6-649P-201ENST00000384463 107 ntBASIC0.64□□□□□ -2.31
PTCHD1Q96NR3 RNU6-663P-201ENST00000391105 106 ntBASIC0.64□□□□□ -2.31
PTCHD1Q96NR3 AC139453.2-201ENST00000487255 133 ntBASIC0.64□□□□□ -2.31
PTCHD1Q96NR3 RNU6-863P-201ENST00000515989 104 ntBASIC0.64□□□□□ -2.31
PTCHD1Q96NR3 RNA5SP121-201ENST00000516537 101 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 180.2 ms