Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 SNORD26-201ENST00000384147 75 ntBASIC1.4□□□□□ -2.19
HIF3AQ9Y2N7 SNORD28-201ENST00000384706 75 ntBASIC1.4□□□□□ -2.19
HIF3AQ9Y2N7 RNA5SP247-201ENST00000411181 105 ntBASIC1.4□□□□□ -2.19
HIF3AQ9Y2N7 AC108667.1-201ENST00000428618 249 ntBASIC1.4□□□□□ -2.19
HIF3AQ9Y2N7 RNU6-1053P-201ENST00000515930 101 ntBASIC1.4□□□□□ -2.19
HIF3AQ9Y2N7 BX248123.2-201ENST00000606318 124 ntBASIC1.4□□□□□ -2.19
HIF3AQ9Y2N7 AC069503.3-201ENST00000618674 145 ntBASIC1.4□□□□□ -2.19
HIF3AQ9Y2N7 MIR378A-201ENST00000362177 66 ntBASIC1.39□□□□□ -2.19
HIF3AQ9Y2N7 MIR200A-201ENST00000384875 90 ntBASIC1.39□□□□□ -2.19
HIF3AQ9Y2N7 SNORD105-201ENST00000386910 85 ntBASIC1.39□□□□□ -2.19
HIF3AQ9Y2N7 SNORD13-201ENST00000459299 104 ntBASIC1.39□□□□□ -2.19
HIF3AQ9Y2N7 MIR4639-201ENST00000584938 69 ntBASIC1.39□□□□□ -2.19
HIF3AQ9Y2N7 AC073869.9-201ENST00000641610 120 ntBASIC1.39□□□□□ -2.19
HIF3AQ9Y2N7 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
HIF3AQ9Y2N7 MIR26B-201ENST00000362251 77 ntBASIC1.38□□□□□ -2.19
HIF3AQ9Y2N7 RNU6-645P-201ENST00000364649 106 ntBASIC1.38□□□□□ -2.19
HIF3AQ9Y2N7 RNU6-499P-201ENST00000365615 107 ntBASIC1.38□□□□□ -2.19
HIF3AQ9Y2N7 MIR633-201ENST00000384821 98 ntBASIC1.38□□□□□ -2.19
HIF3AQ9Y2N7 MIR320A-201ENST00000385302 82 ntBASIC1.38□□□□□ -2.19
HIF3AQ9Y2N7 MIR4460-201ENST00000577862 86 ntBASIC1.38□□□□□ -2.19
HIF3AQ9Y2N7 SNORD18A-201ENST00000363753 72 ntBASIC1.37□□□□□ -2.19
HIF3AQ9Y2N7 RNU6-260P-201ENST00000384092 107 ntBASIC1.37□□□□□ -2.19
HIF3AQ9Y2N7 MIR517C-201ENST00000385103 95 ntBASIC1.37□□□□□ -2.19
HIF3AQ9Y2N7 AC110620.1-201ENST00000416042 228 ntBASIC1.37□□□□□ -2.19
HIF3AQ9Y2N7 RNU7-74P-201ENST00000459104 62 ntBASIC1.37□□□□□ -2.19
HIF3AQ9Y2N7 MIR4498-201ENST00000577599 66 ntBASIC1.37□□□□□ -2.19
HIF3AQ9Y2N7 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
HIF3AQ9Y2N7 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.36□□□□□ -2.19
HIF3AQ9Y2N7 RNU6-1335P-201ENST00000365426 107 ntBASIC1.36□□□□□ -2.19
HIF3AQ9Y2N7 SNORD41.1-201ENST00000391000 69 ntBASIC1.36□□□□□ -2.19
HIF3AQ9Y2N7 SNORD124-201ENST00000459577 104 ntBASIC1.36□□□□□ -2.19
HIF3AQ9Y2N7 RNU6-135P-201ENST00000516769 101 ntBASIC1.36□□□□□ -2.19
HIF3AQ9Y2N7 RNU6-987P-201ENST00000384759 104 ntBASIC1.35□□□□□ -2.19
HIF3AQ9Y2N7 MT-TY-201ENST00000387409 66 ntBASIC1.35□□□□□ -2.19
HIF3AQ9Y2N7 MIR1304-201ENST00000408243 91 ntBASIC1.35□□□□□ -2.19
HIF3AQ9Y2N7 RNU5B-6P-201ENST00000516765 68 ntBASIC1.35□□□□□ -2.19
HIF3AQ9Y2N7 MIR3678-201ENST00000578455 94 ntBASIC1.35□□□□□ -2.19
HIF3AQ9Y2N7 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.34□□□□□ -2.19
HIF3AQ9Y2N7 RNU6-726P-201ENST00000364680 107 ntBASIC1.34□□□□□ -2.19
HIF3AQ9Y2N7 SNORA17.3-201ENST00000391159 129 ntBASIC1.34□□□□□ -2.19
HIF3AQ9Y2N7 MIR1323-201ENST00000408090 73 ntBASIC1.34□□□□□ -2.19
HIF3AQ9Y2N7 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.34□□□□□ -2.19
HIF3AQ9Y2N7 RNA5SP47-201ENST00000517230 109 ntBASIC1.34□□□□□ -2.19
HIF3AQ9Y2N7 SNORA40.17-201ENST00000517256 115 ntBASIC1.34□□□□□ -2.19
HIF3AQ9Y2N7 MIR3612-201ENST00000579753 87 ntBASIC1.34□□□□□ -2.19
HIF3AQ9Y2N7 snoU13.31-201ENST00000607291 104 ntBASIC1.34□□□□□ -2.19
HIF3AQ9Y2N7 RNU6-269P-201ENST00000391077 97 ntBASIC1.33□□□□□ -2.2
HIF3AQ9Y2N7 RNU4-37P-201ENST00000410214 84 ntBASIC1.33□□□□□ -2.2
HIF3AQ9Y2N7 RNU1-92P-201ENST00000517017 135 ntBASIC1.33□□□□□ -2.2
HIF3AQ9Y2N7 SNORA2.1-201ENST00000363089 137 ntBASIC1.32□□□□□ -2.2
HIF3AQ9Y2N7 MIR573-201ENST00000384964 99 ntBASIC1.32□□□□□ -2.2
HIF3AQ9Y2N7 snoU13.13-201ENST00000458842 104 ntBASIC1.32□□□□□ -2.2
HIF3AQ9Y2N7 RNA5SP484-201ENST00000458857 111 ntBASIC1.32□□□□□ -2.2
HIF3AQ9Y2N7 SNORA31.24-201ENST00000517232 57 ntBASIC1.32□□□□□ -2.2
HIF3AQ9Y2N7 SNORD53B-201ENST00000577887 78 ntBASIC1.32□□□□□ -2.2
HIF3AQ9Y2N7 AC025627.3-201ENST00000582078 182 ntBASIC1.32□□□□□ -2.2
HIF3AQ9Y2N7 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.31□□□□□ -2.2
HIF3AQ9Y2N7 RNU1-124P-201ENST00000363861 145 ntBASIC1.31□□□□□ -2.2
HIF3AQ9Y2N7 RNU1-141P-201ENST00000364623 158 ntBASIC1.31□□□□□ -2.2
HIF3AQ9Y2N7 Y_RNA.375-201ENST00000365625 101 ntBASIC1.31□□□□□ -2.2
HIF3AQ9Y2N7 MIR7-2-201ENST00000384970 110 ntBASIC1.31□□□□□ -2.2
HIF3AQ9Y2N7 SNORA67.5-201ENST00000391036 107 ntBASIC1.31□□□□□ -2.2
HIF3AQ9Y2N7 SNORA67.6-201ENST00000391093 99 ntBASIC1.31□□□□□ -2.2
HIF3AQ9Y2N7 AC092634.7-201ENST00000621022 103 ntBASIC1.31□□□□□ -2.2
HIF3AQ9Y2N7 RNU1-42P-201ENST00000364033 160 ntBASIC1.3□□□□□ -2.2
HIF3AQ9Y2N7 SNORD114-24-201ENST00000365029 72 ntBASIC1.3□□□□□ -2.2
HIF3AQ9Y2N7 MIR618-201ENST00000385287 98 ntBASIC1.3□□□□□ -2.2
HIF3AQ9Y2N7 AL354695.1-201ENST00000427935 228 ntBASIC1.3□□□□□ -2.2
HIF3AQ9Y2N7 RNU6-542P-201ENST00000516405 103 ntBASIC1.3□□□□□ -2.2
HIF3AQ9Y2N7 RNA5SP404-201ENST00000517118 132 ntBASIC1.3□□□□□ -2.2
HIF3AQ9Y2N7 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.3□□□□□ -2.2
HIF3AQ9Y2N7 RNA5SP192-201ENST00000364404 120 ntBASIC1.29□□□□□ -2.2
HIF3AQ9Y2N7 RNA5SP299-201ENST00000391203 116 ntBASIC1.29□□□□□ -2.2
HIF3AQ9Y2N7 RNU4-62P-201ENST00000410125 130 ntBASIC1.29□□□□□ -2.2
HIF3AQ9Y2N7 RNU6-656P-201ENST00000516785 107 ntBASIC1.29□□□□□ -2.2
HIF3AQ9Y2N7 AC018659.1-201ENST00000551083 169 ntBASIC1.29□□□□□ -2.2
HIF3AQ9Y2N7 MIR548V-201ENST00000584165 80 ntBASIC1.29□□□□□ -2.2
HIF3AQ9Y2N7 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC1.29□□□□□ -2.2
HIF3AQ9Y2N7 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
HIF3AQ9Y2N7 RNU6-669P-201ENST00000365575 107 ntBASIC1.28□□□□□ -2.2
HIF3AQ9Y2N7 RNU6-939P-201ENST00000384634 107 ntBASIC1.28□□□□□ -2.2
HIF3AQ9Y2N7 MIR548C-201ENST00000384815 97 ntBASIC1.28□□□□□ -2.2
HIF3AQ9Y2N7 TRMT112P2-201ENST00000512910 132 ntBASIC1.28□□□□□ -2.2
HIF3AQ9Y2N7 SCARNA16.5-201ENST00000517114 183 ntBASIC1.28□□□□□ -2.2
HIF3AQ9Y2N7 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.27□□□□□ -2.21
HIF3AQ9Y2N7 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
HIF3AQ9Y2N7 MIR150-201ENST00000385048 84 ntBASIC1.27□□□□□ -2.21
HIF3AQ9Y2N7 TRAJ9-201ENST00000390528 61 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
HIF3AQ9Y2N7 RNA5SP61-201ENST00000516453 100 ntBASIC1.27□□□□□ -2.21
HIF3AQ9Y2N7 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.27□□□□□ -2.21
HIF3AQ9Y2N7 MIR4303-201ENST00000581299 66 ntBASIC1.27□□□□□ -2.21
HIF3AQ9Y2N7 SNORA25.5-201ENST00000363782 126 ntBASIC1.26□□□□□ -2.21
HIF3AQ9Y2N7 Y_RNA.226-201ENST00000364337 114 ntBASIC1.26□□□□□ -2.21
HIF3AQ9Y2N7 MIR1287-201ENST00000408492 90 ntBASIC1.26□□□□□ -2.21
HIF3AQ9Y2N7 AP1B1P2-201ENST00000416196 106 ntBASIC1.26□□□□□ -2.21
HIF3AQ9Y2N7 AC079150.2-201ENST00000443733 78 ntBASIC1.26□□□□□ -2.21
HIF3AQ9Y2N7 RNA5SP255-201ENST00000516370 107 ntBASIC1.26□□□□□ -2.21
HIF3AQ9Y2N7 AC011195.1-201ENST00000578177 177 ntBASIC1.26□□□□□ -2.21
HIF3AQ9Y2N7 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.25□□□□□ -2.21
HIF3AQ9Y2N7 RNU6-1079P-201ENST00000362861 110 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 293.2 ms