Protein–RNA interactions for Protein: P49642

PRIM1, DNA primase small subunit, humanhuman

Known RBP Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1P49642 RNU6ATAC8P-201ENST00000408460 126 ntBASIC2.1□□□□□ -2.07
PRIM1P49642 RNU6-542P-201ENST00000516405 103 ntBASIC2.1□□□□□ -2.07
PRIM1P49642 MIR548AG2-201ENST00000581228 64 ntBASIC2.1□□□□□ -2.07
PRIM1P49642 MIR4639-201ENST00000584938 69 ntBASIC2.1□□□□□ -2.07
PRIM1P49642 RMST_2.1-201ENST00000617263 136 ntBASIC2.1□□□□□ -2.07
PRIM1P49642 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
PRIM1P49642 SNORA7.1-201ENST00000363750 139 ntBASIC2.09□□□□□ -2.07
PRIM1P49642 SNORA40.6-201ENST00000391153 128 ntBASIC2.09□□□□□ -2.07
PRIM1P49642 MIR3122-201ENST00000577243 73 ntBASIC2.09□□□□□ -2.07
PRIM1P49642 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC2.09□□□□□ -2.08
PRIM1P49642 MIR519E-201ENST00000385075 84 ntBASIC2.08□□□□□ -2.08
PRIM1P49642 SNORA67.6-201ENST00000391093 99 ntBASIC2.07□□□□□ -2.08
PRIM1P49642 MIR1323-201ENST00000408090 73 ntBASIC2.06□□□□□ -2.08
PRIM1P49642 FABP5P4-201ENST00000437203 171 ntBASIC2.06□□□□□ -2.08
PRIM1P49642 RNU6-1110P-201ENST00000516462 101 ntBASIC2.06□□□□□ -2.08
PRIM1P49642 SNORD114-4-201ENST00000363962 75 ntBASIC2.05□□□□□ -2.08
PRIM1P49642 RNA5SP363-201ENST00000365072 115 ntBASIC2.05□□□□□ -2.08
PRIM1P49642 AC002350.1-201ENST00000490759 375 ntBASIC2.05□□□□□ -2.08
PRIM1P49642 MIR4421-201ENST00000578133 69 ntBASIC2.05□□□□□ -2.08
PRIM1P49642 SNORD41.1-201ENST00000391000 69 ntBASIC2.04□□□□□ -2.08
PRIM1P49642 RNU6-1187P-201ENST00000364771 110 ntBASIC2.03□□□□□ -2.08
PRIM1P49642 Y_RNA.375-201ENST00000365625 101 ntBASIC2.03□□□□□ -2.08
PRIM1P49642 MIR222-201ENST00000384992 110 ntBASIC2.03□□□□□ -2.08
PRIM1P49642 RNU1-123P-201ENST00000458950 160 ntBASIC2.03□□□□□ -2.08
PRIM1P49642 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC2.03□□□□□ -2.08
PRIM1P49642 SNORA2.1-201ENST00000363089 137 ntBASIC2.02□□□□□ -2.09
PRIM1P49642 Y_RNA.250-201ENST00000364542 110 ntBASIC2.02□□□□□ -2.09
PRIM1P49642 RNU6-260P-201ENST00000384092 107 ntBASIC2.02□□□□□ -2.09
PRIM1P49642 RNA5SP102-201ENST00000516865 106 ntBASIC2.02□□□□□ -2.09
PRIM1P49642 RNU6-1335P-201ENST00000365426 107 ntBASIC2.01□□□□□ -2.09
PRIM1P49642 MIR517C-201ENST00000385103 95 ntBASIC2.01□□□□□ -2.09
PRIM1P49642 MIR548L-201ENST00000408303 86 ntBASIC2.01□□□□□ -2.09
PRIM1P49642 RNU1-92P-201ENST00000517017 135 ntBASIC2.01□□□□□ -2.09
PRIM1P49642 NAMPTP3-201ENST00000569273 224 ntBASIC2.01□□□□□ -2.09
PRIM1P49642 MIR4452-201ENST00000583004 71 ntBASIC2.01□□□□□ -2.09
PRIM1P49642 U7.7-201ENST00000459276 60 ntBASIC2□□□□□ -2.09
PRIM1P49642 RNU6-982P-201ENST00000516216 102 ntBASIC2□□□□□ -2.09
PRIM1P49642 MIR3657-201ENST00000584818 117 ntBASIC2□□□□□ -2.09
PRIM1P49642 RNA5SP215-201ENST00000363440 122 ntBASIC1.99□□□□□ -2.09
PRIM1P49642 SNORD28-201ENST00000384706 75 ntBASIC1.99□□□□□ -2.09
PRIM1P49642 AC002429.1-201ENST00000437672 148 ntBASIC1.99□□□□□ -2.09
PRIM1P49642 MT-TY-201ENST00000387409 66 ntBASIC1.98□□□□□ -2.09
PRIM1P49642 SNORA31.24-201ENST00000517232 57 ntBASIC1.98□□□□□ -2.09
PRIM1P49642 RNU6-54P-201ENST00000365563 107 ntBASIC1.97□□□□□ -2.09
PRIM1P49642 RNU6V-201ENST00000384105 107 ntBASIC1.97□□□□□ -2.09
PRIM1P49642 MIR4460-201ENST00000577862 86 ntBASIC1.97□□□□□ -2.09
PRIM1P49642 AC244669.1-204ENST00000621564 178 ntBASIC1.97□□□□□ -2.09
PRIM1P49642 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
PRIM1P49642 RNU6-645P-201ENST00000364649 106 ntBASIC1.96□□□□□ -2.1
PRIM1P49642 RNU6-302P-201ENST00000365249 107 ntBASIC1.96□□□□□ -2.1
PRIM1P49642 SNORD114-22-201ENST00000365423 72 ntBASIC1.96□□□□□ -2.1
PRIM1P49642 SNORD105-201ENST00000386910 85 ntBASIC1.96□□□□□ -2.1
PRIM1P49642 AL353770.2-201ENST00000620024 78 ntBASIC1.96□□□□□ -2.1
PRIM1P49642 RNU6-940P-201ENST00000363433 104 ntBASIC1.95□□□□□ -2.1
PRIM1P49642 RNU6-614P-201ENST00000384369 107 ntBASIC1.95□□□□□ -2.1
PRIM1P49642 SNORA25-201ENST00000384384 134 ntBASIC1.95□□□□□ -2.1
PRIM1P49642 AL354695.1-201ENST00000427935 228 ntBASIC1.95□□□□□ -2.1
PRIM1P49642 U6.59-201ENST00000615686 107 ntBASIC1.95□□□□□ -2.1
PRIM1P49642 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.94□□□□□ -2.1
PRIM1P49642 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.94□□□□□ -2.1
PRIM1P49642 RNU6-141P-201ENST00000410499 105 ntBASIC1.94□□□□□ -2.1
PRIM1P49642 MIR203A-201ENST00000384836 110 ntBASIC1.93□□□□□ -2.1
PRIM1P49642 MIR200A-201ENST00000384875 90 ntBASIC1.93□□□□□ -2.1
PRIM1P49642 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.93□□□□□ -2.1
PRIM1P49642 RNU6-42P-201ENST00000384165 107 ntBASIC1.92□□□□□ -2.1
PRIM1P49642 MIR644A-201ENST00000385262 94 ntBASIC1.92□□□□□ -2.1
PRIM1P49642 AC079150.2-201ENST00000443733 78 ntBASIC1.92□□□□□ -2.1
PRIM1P49642 AC025627.3-201ENST00000582078 182 ntBASIC1.92□□□□□ -2.1
PRIM1P49642 MIR6739-201ENST00000622461 75 ntBASIC1.92□□□□□ -2.1
PRIM1P49642 MIR96-201ENST00000362288 78 ntBASIC1.91□□□□□ -2.1
PRIM1P49642 SNORA8.2-201ENST00000384372 139 ntBASIC1.91□□□□□ -2.1
PRIM1P49642 Y_RNA.540-201ENST00000384638 111 ntBASIC1.91□□□□□ -2.1
PRIM1P49642 RNU4ATAC4P-201ENST00000516307 126 ntBASIC1.91□□□□□ -2.1
PRIM1P49642 RNA5SP47-201ENST00000517230 109 ntBASIC1.91□□□□□ -2.1
PRIM1P49642 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.91□□□□□ -2.1
PRIM1P49642 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
PRIM1P49642 SNORA25.5-201ENST00000363782 126 ntBASIC1.9□□□□□ -2.11
PRIM1P49642 RNU6-726P-201ENST00000364680 107 ntBASIC1.9□□□□□ -2.11
PRIM1P49642 RNU6-1162P-201ENST00000384443 104 ntBASIC1.9□□□□□ -2.11
PRIM1P49642 SNORD89-201ENST00000390981 114 ntBASIC1.9□□□□□ -2.11
PRIM1P49642 AC018659.1-201ENST00000551083 169 ntBASIC1.9□□□□□ -2.11
PRIM1P49642 AC092634.7-201ENST00000621022 103 ntBASIC1.9□□□□□ -2.11
PRIM1P49642 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
PRIM1P49642 SNORD18A-201ENST00000363753 72 ntBASIC1.89□□□□□ -2.11
PRIM1P49642 RNU1-141P-201ENST00000364623 158 ntBASIC1.89□□□□□ -2.11
PRIM1P49642 MIR1304-201ENST00000408243 91 ntBASIC1.89□□□□□ -2.11
PRIM1P49642 SCARNA21.1-201ENST00000515996 128 ntBASIC1.89□□□□□ -2.11
PRIM1P49642 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC1.88□□□□□ -2.11
PRIM1P49642 MIR19B1-201ENST00000384829 87 ntBASIC1.88□□□□□ -2.11
PRIM1P49642 SNORD42B-201ENST00000458893 67 ntBASIC1.88□□□□□ -2.11
PRIM1P49642 RNA5SP220-201ENST00000516298 104 ntBASIC1.88□□□□□ -2.11
PRIM1P49642 SCARNA16.5-201ENST00000517114 183 ntBASIC1.88□□□□□ -2.11
PRIM1P49642 MIR4285-201ENST00000581001 85 ntBASIC1.88□□□□□ -2.11
PRIM1P49642 AL109933.3-201ENST00000619095 188 ntBASIC1.88□□□□□ -2.11
PRIM1P49642 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
PRIM1P49642 RNU4-45P-201ENST00000365469 141 ntBASIC1.86□□□□□ -2.11
PRIM1P49642 MIR6734-201ENST00000621166 68 ntBASIC1.86□□□□□ -2.11
PRIM1P49642 MIR573-201ENST00000384964 99 ntBASIC1.85□□□□□ -2.11
PRIM1P49642 RNA5SP480-201ENST00000516840 109 ntBASIC1.85□□□□□ -2.11
PRIM1P49642 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.85□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 219 ms