Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC130289.1-201ENST00000577321 73 ntBASIC-1.08□□□□□ -2.58
HDDC3Q8N4P3 SNORD114-14-201ENST00000362723 75 ntBASIC-1.09□□□□□ -2.58
HDDC3Q8N4P3 Y_RNA.78-201ENST00000362970 110 ntBASIC-1.09□□□□□ -2.58
HDDC3Q8N4P3 SNORD38.1-201ENST00000363863 68 ntBASIC-1.09□□□□□ -2.58
HDDC3Q8N4P3 RNU6-900P-201ENST00000384498 102 ntBASIC-1.09□□□□□ -2.58
HDDC3Q8N4P3 Y_RNA.198-201ENST00000364013 98 ntBASIC-1.1□□□□□ -2.59
HDDC3Q8N4P3 RNU4-11P-201ENST00000365287 132 ntBASIC-1.1□□□□□ -2.59
HDDC3Q8N4P3 SNORD101-201ENST00000384027 73 ntBASIC-1.1□□□□□ -2.59
HDDC3Q8N4P3 AL391099.1-201ENST00000624635 187 ntBASIC-1.1□□□□□ -2.59
HDDC3Q8N4P3 RNU6-1313P-201ENST00000362622 102 ntBASIC-1.11□□□□□ -2.59
HDDC3Q8N4P3 MIR3121-201ENST00000579680 77 ntBASIC-1.11□□□□□ -2.59
HDDC3Q8N4P3 RNU6-915P-201ENST00000364943 103 ntBASIC-1.12□□□□□ -2.59
HDDC3Q8N4P3 MIR568-201ENST00000385036 95 ntBASIC-1.12□□□□□ -2.59
HDDC3Q8N4P3 AL118496.2-201ENST00000448300 230 ntBASIC-1.12□□□□□ -2.59
HDDC3Q8N4P3 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-1.12□□□□□ -2.59
HDDC3Q8N4P3 U4.2-201ENST00000618561 85 ntBASIC-1.12□□□□□ -2.59
HDDC3Q8N4P3 Y_RNA.785-201ENST00000384290 109 ntBASIC-1.13□□□□□ -2.59
HDDC3Q8N4P3 MIR1263-201ENST00000408324 86 ntBASIC-1.13□□□□□ -2.59
HDDC3Q8N4P3 RNA5SP136-201ENST00000410906 107 ntBASIC-1.13□□□□□ -2.59
HDDC3Q8N4P3 AC021146.6-201ENST00000514659 117 ntBASIC-1.13□□□□□ -2.59
HDDC3Q8N4P3 RNU6-1006P-201ENST00000516998 103 ntBASIC-1.13□□□□□ -2.59
HDDC3Q8N4P3 MIR4324-201ENST00000584846 72 ntBASIC-1.13□□□□□ -2.59
HDDC3Q8N4P3 U4.1-201ENST00000620349 87 ntBASIC-1.13□□□□□ -2.59
HDDC3Q8N4P3 SNORD115-25-201ENST00000362619 82 ntBASIC-1.14□□□□□ -2.59
HDDC3Q8N4P3 Y_RNA.133-201ENST00000363428 110 ntBASIC-1.14□□□□□ -2.59
HDDC3Q8N4P3 MIR548D2-201ENST00000384955 97 ntBASIC-1.14□□□□□ -2.59
HDDC3Q8N4P3 RN7SKP19-201ENST00000516016 252 ntBASIC-1.14□□□□□ -2.59
HDDC3Q8N4P3 SCARNA17-201ENST00000516183 144 ntBASIC-1.14□□□□□ -2.59
HDDC3Q8N4P3 Y_RNA.674-201ENST00000516362 113 ntBASIC-1.14□□□□□ -2.59
HDDC3Q8N4P3 Y_RNA.155-201ENST00000363632 101 ntBASIC-1.15□□□□□ -2.59
HDDC3Q8N4P3 RNU6-647P-201ENST00000364243 107 ntBASIC-1.15□□□□□ -2.59
HDDC3Q8N4P3 Y_RNA.307-201ENST00000365022 117 ntBASIC-1.15□□□□□ -2.59
HDDC3Q8N4P3 Y_RNA.437-201ENST00000384113 113 ntBASIC-1.15□□□□□ -2.59
HDDC3Q8N4P3 RNU6-460P-201ENST00000391158 108 ntBASIC-1.15□□□□□ -2.59
HDDC3Q8N4P3 SNORD2-201ENST00000459163 69 ntBASIC-1.15□□□□□ -2.59
HDDC3Q8N4P3 SCARNA17.3-201ENST00000516381 125 ntBASIC-1.15□□□□□ -2.59
HDDC3Q8N4P3 AP002392.1-201ENST00000537692 208 ntBASIC-1.15□□□□□ -2.59
HDDC3Q8N4P3 RNU6-664P-201ENST00000362381 107 ntBASIC-1.16□□□□□ -2.6
HDDC3Q8N4P3 RNU6-363P-201ENST00000362895 105 ntBASIC-1.16□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.507-201ENST00000384500 99 ntBASIC-1.16□□□□□ -2.6
HDDC3Q8N4P3 SNORD56B-201ENST00000384713 71 ntBASIC-1.16□□□□□ -2.6
HDDC3Q8N4P3 RNU6-935P-201ENST00000410371 100 ntBASIC-1.16□□□□□ -2.6
HDDC3Q8N4P3 RNU6-1133P-201ENST00000410963 100 ntBASIC-1.16□□□□□ -2.6
HDDC3Q8N4P3 RNA5SP169-201ENST00000517268 117 ntBASIC-1.16□□□□□ -2.6
HDDC3Q8N4P3 MIR4696-201ENST00000581431 70 ntBASIC-1.16□□□□□ -2.6
HDDC3Q8N4P3 MIR548O2-201ENST00000616090 70 ntBASIC-1.16□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.114-201ENST00000363265 113 ntBASIC-1.17□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.240-201ENST00000364469 95 ntBASIC-1.17□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.247-201ENST00000364500 92 ntBASIC-1.17□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.297-201ENST00000364950 91 ntBASIC-1.17□□□□□ -2.6
HDDC3Q8N4P3 RNU6-1062P-201ENST00000383908 107 ntBASIC-1.17□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.401-201ENST00000383965 117 ntBASIC-1.17□□□□□ -2.6
HDDC3Q8N4P3 RNU6-409P-201ENST00000384114 104 ntBASIC-1.17□□□□□ -2.6
HDDC3Q8N4P3 RNU6-1162P-201ENST00000384443 104 ntBASIC-1.17□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.601-201ENST00000410500 113 ntBASIC-1.17□□□□□ -2.6
HDDC3Q8N4P3 RNU6-1135P-201ENST00000411083 103 ntBASIC-1.17□□□□□ -2.6
HDDC3Q8N4P3 RNU6-1018P-201ENST00000516577 106 ntBASIC-1.17□□□□□ -2.6
HDDC3Q8N4P3 SNORA40.17-201ENST00000517256 115 ntBASIC-1.17□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.413-201ENST00000384007 102 ntBASIC-1.18□□□□□ -2.6
HDDC3Q8N4P3 snoU13.13-201ENST00000458842 104 ntBASIC-1.18□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.754-201ENST00000476024 102 ntBASIC-1.18□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.18□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.18□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.648-201ENST00000459455 110 ntBASIC-1.19□□□□□ -2.6
HDDC3Q8N4P3 RNU6-151P-201ENST00000364158 107 ntBASIC-1.2□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.272-201ENST00000364696 102 ntBASIC-1.2□□□□□ -2.6
HDDC3Q8N4P3 MIR513C-201ENST00000401352 84 ntBASIC-1.2□□□□□ -2.6
HDDC3Q8N4P3 RNU7-197P-201ENST00000458836 62 ntBASIC-1.2□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.662-201ENST00000516028 97 ntBASIC-1.2□□□□□ -2.6
HDDC3Q8N4P3 RNU6-327P-201ENST00000516270 127 ntBASIC-1.2□□□□□ -2.6
HDDC3Q8N4P3 RNU6-1125P-201ENST00000363601 107 ntBASIC-1.21□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.193-201ENST00000363979 102 ntBASIC-1.21□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.283-201ENST00000364798 112 ntBASIC-1.21□□□□□ -2.6
HDDC3Q8N4P3 RNU6-762P-201ENST00000517107 102 ntBASIC-1.21□□□□□ -2.6
HDDC3Q8N4P3 MIR378F-201ENST00000578143 78 ntBASIC-1.21□□□□□ -2.6
HDDC3Q8N4P3 MIR4436A-201ENST00000585278 85 ntBASIC-1.21□□□□□ -2.6
HDDC3Q8N4P3 SNORD114-4-201ENST00000363962 75 ntBASIC-1.22□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.441-201ENST00000384123 112 ntBASIC-1.22□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.528-201ENST00000384575 108 ntBASIC-1.22□□□□□ -2.6
HDDC3Q8N4P3 SNORA49-201ENST00000386157 136 ntBASIC-1.22□□□□□ -2.6
HDDC3Q8N4P3 SNORA13-201ENST00000458790 133 ntBASIC-1.22□□□□□ -2.6
HDDC3Q8N4P3 Y_RNA.677-201ENST00000516401 85 ntBASIC-1.22□□□□□ -2.6
HDDC3Q8N4P3 MIR6851-201ENST00000617060 67 ntBASIC-1.22□□□□□ -2.6
HDDC3Q8N4P3 AC141273.2-201ENST00000618989 130 ntBASIC-1.22□□□□□ -2.6
HDDC3Q8N4P3 MIR451A-201ENST00000385059 72 ntBASIC-1.23□□□□□ -2.61
HDDC3Q8N4P3 RNU7-55P-201ENST00000459426 62 ntBASIC-1.23□□□□□ -2.61
HDDC3Q8N4P3 MIR4280-201ENST00000582178 76 ntBASIC-1.23□□□□□ -2.61
HDDC3Q8N4P3 AL442128.1-201ENST00000615151 90 ntBASIC-1.23□□□□□ -2.61
HDDC3Q8N4P3 Y_RNA.778-201ENST00000620203 90 ntBASIC-1.23□□□□□ -2.61
HDDC3Q8N4P3 Y_RNA.239-201ENST00000364444 113 ntBASIC-1.24□□□□□ -2.61
HDDC3Q8N4P3 SNORD38.3-201ENST00000516599 73 ntBASIC-1.24□□□□□ -2.61
HDDC3Q8N4P3 RNU6-861P-201ENST00000516745 106 ntBASIC-1.24□□□□□ -2.61
HDDC3Q8N4P3 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-1.24□□□□□ -2.61
HDDC3Q8N4P3 RNU6-235P-201ENST00000362644 107 ntBASIC-1.25□□□□□ -2.61
HDDC3Q8N4P3 Y_RNA.489-201ENST00000384410 101 ntBASIC-1.25□□□□□ -2.61
HDDC3Q8N4P3 MIR1207-201ENST00000408249 87 ntBASIC-1.25□□□□□ -2.61
HDDC3Q8N4P3 AL353813.1-201ENST00000440700 253 ntBASIC-1.25□□□□□ -2.61
HDDC3Q8N4P3 RNU6-1234P-201ENST00000516877 103 ntBASIC-1.25□□□□□ -2.61
HDDC3Q8N4P3 RNU6-54P-201ENST00000365563 107 ntBASIC-1.26□□□□□ -2.61
HDDC3Q8N4P3 RNU6-1011P-201ENST00000384668 107 ntBASIC-1.26□□□□□ -2.61
Retrieved 100 of 98,524 protein–RNA pairs in 198.3 ms