Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 RNU6-1162P-201ENST00000384443 104 ntBASIC-0.67□□□□□ -2.52
RFX3P48380 MIR548G-201ENST00000408442 89 ntBASIC-0.67□□□□□ -2.52
RFX3P48380 SNORA7.5-201ENST00000410672 110 ntBASIC-0.67□□□□□ -2.52
RFX3P48380 AL353813.1-201ENST00000440700 253 ntBASIC-0.67□□□□□ -2.52
RFX3P48380 RNU7-197P-201ENST00000458836 62 ntBASIC-0.67□□□□□ -2.52
RFX3P48380 RN7SKP19-201ENST00000516016 252 ntBASIC-0.67□□□□□ -2.52
RFX3P48380 Y_RNA.662-201ENST00000516028 97 ntBASIC-0.67□□□□□ -2.52
RFX3P48380 SNORD38.3-201ENST00000516599 73 ntBASIC-0.67□□□□□ -2.52
RFX3P48380 RNU6-762P-201ENST00000517107 102 ntBASIC-0.67□□□□□ -2.52
RFX3P48380 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-0.67□□□□□ -2.52
RFX3P48380 RNU6-363P-201ENST00000362895 105 ntBASIC-0.68□□□□□ -2.52
RFX3P48380 Y_RNA.78-201ENST00000362970 110 ntBASIC-0.68□□□□□ -2.52
RFX3P48380 Y_RNA.173-201ENST00000363776 113 ntBASIC-0.68□□□□□ -2.52
RFX3P48380 RNU6-694P-201ENST00000364071 147 ntBASIC-0.68□□□□□ -2.52
RFX3P48380 Y_RNA.371-201ENST00000365591 113 ntBASIC-0.68□□□□□ -2.52
RFX3P48380 RNU6-30P-201ENST00000384561 107 ntBASIC-0.68□□□□□ -2.52
RFX3P48380 snoU13.11-201ENST00000459219 104 ntBASIC-0.68□□□□□ -2.52
RFX3P48380 MIR4280-201ENST00000582178 76 ntBASIC-0.68□□□□□ -2.52
RFX3P48380 MIR4503-201ENST00000582187 83 ntBASIC-0.68□□□□□ -2.52
RFX3P48380 Y_RNA.114-201ENST00000363265 113 ntBASIC-0.69□□□□□ -2.52
RFX3P48380 Y_RNA.785-201ENST00000384290 109 ntBASIC-0.69□□□□□ -2.52
RFX3P48380 RNU6-901P-201ENST00000384593 106 ntBASIC-0.69□□□□□ -2.52
RFX3P48380 MIR548D2-201ENST00000384955 97 ntBASIC-0.69□□□□□ -2.52
RFX3P48380 RNU7-120P-201ENST00000459334 63 ntBASIC-0.69□□□□□ -2.52
RFX3P48380 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC-0.69□□□□□ -2.52
RFX3P48380 RNU6-1057P-201ENST00000517162 102 ntBASIC-0.69□□□□□ -2.52
RFX3P48380 SNORD114-14-201ENST00000362723 75 ntBASIC-0.7□□□□□ -2.52
RFX3P48380 RNU6-54P-201ENST00000365563 107 ntBASIC-0.7□□□□□ -2.52
RFX3P48380 Y_RNA.437-201ENST00000384113 113 ntBASIC-0.7□□□□□ -2.52
RFX3P48380 RNU6-900P-201ENST00000384498 102 ntBASIC-0.7□□□□□ -2.52
RFX3P48380 RNU6-466P-201ENST00000391224 103 ntBASIC-0.7□□□□□ -2.52
RFX3P48380 MIR513C-201ENST00000401352 84 ntBASIC-0.7□□□□□ -2.52
RFX3P48380 RNU4-63P-201ENST00000411313 118 ntBASIC-0.7□□□□□ -2.52
RFX3P48380 MTND3P2-201ENST00000438452 342 ntBASIC-0.7□□□□□ -2.52
RFX3P48380 AC141273.2-201ENST00000618989 130 ntBASIC-0.7□□□□□ -2.52
RFX3P48380 Y_RNA.778-201ENST00000620203 90 ntBASIC-0.7□□□□□ -2.52
RFX3P48380 AP001340.1-201ENST00000624405 217 ntBASIC-0.7□□□□□ -2.52
RFX3P48380 SNORD115-25-201ENST00000362619 82 ntBASIC-0.71□□□□□ -2.52
RFX3P48380 Y_RNA.162-201ENST00000363683 102 ntBASIC-0.71□□□□□ -2.52
RFX3P48380 RNU6-460P-201ENST00000391158 108 ntBASIC-0.71□□□□□ -2.52
RFX3P48380 SNORD2-201ENST00000459163 69 ntBASIC-0.71□□□□□ -2.52
RFX3P48380 MIR5704-201ENST00000584029 77 ntBASIC-0.71□□□□□ -2.52
RFX3P48380 RNU6-151P-201ENST00000364158 107 ntBASIC-0.72□□□□□ -2.52
RFX3P48380 SNORD101-201ENST00000384027 73 ntBASIC-0.72□□□□□ -2.52
RFX3P48380 RNU6-409P-201ENST00000384114 104 ntBASIC-0.72□□□□□ -2.52
RFX3P48380 Y_RNA.507-201ENST00000384500 99 ntBASIC-0.72□□□□□ -2.52
RFX3P48380 MIR1263-201ENST00000408324 86 ntBASIC-0.72□□□□□ -2.52
RFX3P48380 RNU7-55P-201ENST00000459426 62 ntBASIC-0.72□□□□□ -2.52
RFX3P48380 SCARNA17.3-201ENST00000516381 125 ntBASIC-0.72□□□□□ -2.52
RFX3P48380 RNA5SP67-201ENST00000516422 131 ntBASIC-0.72□□□□□ -2.52
RFX3P48380 RNU6-861P-201ENST00000516745 106 ntBASIC-0.72□□□□□ -2.52
RFX3P48380 AP001328.1-201ENST00000528550 176 ntBASIC-0.72□□□□□ -2.52
RFX3P48380 MIR4696-201ENST00000581431 70 ntBASIC-0.72□□□□□ -2.52
RFX3P48380 MIR548O2-201ENST00000616090 70 ntBASIC-0.72□□□□□ -2.52
RFX3P48380 MIR6851-201ENST00000617060 67 ntBASIC-0.72□□□□□ -2.52
RFX3P48380 RNU6-664P-201ENST00000362381 107 ntBASIC-0.73□□□□□ -2.53
RFX3P48380 MIR204-201ENST00000385200 110 ntBASIC-0.73□□□□□ -2.53
RFX3P48380 Y_RNA.580-201ENST00000391004 95 ntBASIC-0.73□□□□□ -2.53
RFX3P48380 MIR548E-201ENST00000408287 88 ntBASIC-0.73□□□□□ -2.53
RFX3P48380 Y_RNA.700-201ENST00000516806 100 ntBASIC-0.73□□□□□ -2.53
RFX3P48380 SNORA81.3-201ENST00000517283 198 ntBASIC-0.73□□□□□ -2.53
RFX3P48380 RNU6-235P-201ENST00000362644 107 ntBASIC-0.74□□□□□ -2.53
RFX3P48380 RNU6-1125P-201ENST00000363601 107 ntBASIC-0.74□□□□□ -2.53
RFX3P48380 RNY4P6-201ENST00000363667 96 ntBASIC-0.74□□□□□ -2.53
RFX3P48380 RNU6-682P-201ENST00000363843 106 ntBASIC-0.74□□□□□ -2.53
RFX3P48380 Y_RNA.239-201ENST00000364444 113 ntBASIC-0.74□□□□□ -2.53
RFX3P48380 Y_RNA.155-201ENST00000363632 101 ntBASIC-0.75□□□□□ -2.53
RFX3P48380 Y_RNA.528-201ENST00000384575 108 ntBASIC-0.75□□□□□ -2.53
RFX3P48380 RNU6-476P-201ENST00000384726 107 ntBASIC-0.75□□□□□ -2.53
RFX3P48380 RNU6-935P-201ENST00000410371 100 ntBASIC-0.75□□□□□ -2.53
RFX3P48380 Y_RNA.648-201ENST00000459455 110 ntBASIC-0.75□□□□□ -2.53
RFX3P48380 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-0.75□□□□□ -2.53
RFX3P48380 AL442128.1-201ENST00000615151 90 ntBASIC-0.75□□□□□ -2.53
RFX3P48380 RNU6-200P-201ENST00000364743 107 ntBASIC-0.76□□□□□ -2.53
RFX3P48380 Y_RNA.283-201ENST00000364798 112 ntBASIC-0.76□□□□□ -2.53
RFX3P48380 MIR451A-201ENST00000385059 72 ntBASIC-0.76□□□□□ -2.53
RFX3P48380 MT-TQ-201ENST00000387372 72 ntBASIC-0.76□□□□□ -2.53
RFX3P48380 RNU6-721P-201ENST00000410155 105 ntBASIC-0.76□□□□□ -2.53
RFX3P48380 Y_RNA.601-201ENST00000410500 113 ntBASIC-0.76□□□□□ -2.53
RFX3P48380 SNORD42B-201ENST00000458893 67 ntBASIC-0.76□□□□□ -2.53
RFX3P48380 Y_RNA.677-201ENST00000516401 85 ntBASIC-0.76□□□□□ -2.53
RFX3P48380 RNU6-1234P-201ENST00000516877 103 ntBASIC-0.76□□□□□ -2.53
RFX3P48380 MIR8068-201ENST00000618032 68 ntBASIC-0.76□□□□□ -2.53
RFX3P48380 SNORD114-4-201ENST00000363962 75 ntBASIC-0.77□□□□□ -2.53
RFX3P48380 Y_RNA.344-201ENST00000365381 112 ntBASIC-0.77□□□□□ -2.53
RFX3P48380 RNU6-463P-201ENST00000384340 107 ntBASIC-0.77□□□□□ -2.53
RFX3P48380 U3.27-201ENST00000391237 200 ntBASIC-0.77□□□□□ -2.53
RFX3P48380 AL158147.1-201ENST00000443970 75 ntBASIC-0.77□□□□□ -2.53
RFX3P48380 RNU6-138P-201ENST00000515952 107 ntBASIC-0.77□□□□□ -2.53
RFX3P48380 SCARNA15.1-201ENST00000516384 125 ntBASIC-0.77□□□□□ -2.53
RFX3P48380 SNORA40.17-201ENST00000517256 115 ntBASIC-0.77□□□□□ -2.53
RFX3P48380 AL627230.5-201ENST00000619807 58 ntBASIC-0.77□□□□□ -2.53
RFX3P48380 Y_RNA.29-201ENST00000362570 113 ntBASIC-0.78□□□□□ -2.53
RFX3P48380 RNU6-75P-201ENST00000515944 104 ntBASIC-0.78□□□□□ -2.53
RFX3P48380 RNU6-1271P-201ENST00000517049 105 ntBASIC-0.78□□□□□ -2.53
RFX3P48380 MIR548X2-201ENST00000579776 100 ntBASIC-0.78□□□□□ -2.53
RFX3P48380 U7.2-201ENST00000607576 63 ntBASIC-0.78□□□□□ -2.53
RFX3P48380 MTND5P18-201ENST00000445624 1801 ntBASIC-0.78□□□□□ -2.53
RFX3P48380 Y_RNA.353-201ENST00000365440 108 ntBASIC-0.79□□□□□ -2.54
RFX3P48380 SNORA13-201ENST00000458790 133 ntBASIC-0.79□□□□□ -2.54
Retrieved 100 of 98,524 protein–RNA pairs in 174.1 ms