Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNU6-455P-201ENST00000384681 107 ntBASIC-0.93□□□□□ -2.56
HDDC3Q8N4P3 TRAJ28-201ENST00000390509 66 ntAPPRIS P1 BASIC-0.93□□□□□ -2.56
HDDC3Q8N4P3 RNU6-239P-201ENST00000390990 99 ntBASIC-0.93□□□□□ -2.56
HDDC3Q8N4P3 RNU6-243P-201ENST00000391140 107 ntBASIC-0.93□□□□□ -2.56
HDDC3Q8N4P3 MIR1302-3-201ENST00000408128 138 ntBASIC-0.93□□□□□ -2.56
HDDC3Q8N4P3 RNU6-1219P-201ENST00000516143 112 ntBASIC-0.93□□□□□ -2.56
HDDC3Q8N4P3 RNU6-287P-201ENST00000516230 98 ntBASIC-0.93□□□□□ -2.56
HDDC3Q8N4P3 Y_RNA.686-201ENST00000516548 134 ntBASIC-0.93□□□□□ -2.56
HDDC3Q8N4P3 RNU6-521P-201ENST00000516663 105 ntBASIC-0.93□□□□□ -2.56
HDDC3Q8N4P3 RNA5SP66-201ENST00000517178 101 ntBASIC-0.93□□□□□ -2.56
HDDC3Q8N4P3 Y_RNA.11-201ENST00000362375 109 ntBASIC-0.94□□□□□ -2.56
HDDC3Q8N4P3 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.94□□□□□ -2.56
HDDC3Q8N4P3 MIR4432-201ENST00000581823 84 ntBASIC-0.94□□□□□ -2.56
HDDC3Q8N4P3 TRDV1-202ENST00000621643 102 ntBASIC-0.94□□□□□ -2.56
HDDC3Q8N4P3 Y_RNA.83-201ENST00000363005 113 ntBASIC-0.95□□□□□ -2.56
HDDC3Q8N4P3 MIR539-201ENST00000365690 78 ntBASIC-0.95□□□□□ -2.56
HDDC3Q8N4P3 RNU6-47P-201ENST00000383866 107 ntBASIC-0.95□□□□□ -2.56
HDDC3Q8N4P3 MT-TY-201ENST00000387409 66 ntBASIC-0.95□□□□□ -2.56
HDDC3Q8N4P3 MIR3163-201ENST00000581592 73 ntBASIC-0.95□□□□□ -2.56
HDDC3Q8N4P3 MIR3128-201ENST00000581957 66 ntBASIC-0.95□□□□□ -2.56
HDDC3Q8N4P3 AC108081.1-201ENST00000604358 221 ntBASIC-0.95□□□□□ -2.56
HDDC3Q8N4P3 Y_RNA.200-201ENST00000364018 102 ntBASIC-0.96□□□□□ -2.56
HDDC3Q8N4P3 Y_RNA.326-201ENST00000365176 113 ntBASIC-0.96□□□□□ -2.56
HDDC3Q8N4P3 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.96□□□□□ -2.56
HDDC3Q8N4P3 RNU6-175P-201ENST00000516896 107 ntBASIC-0.96□□□□□ -2.56
HDDC3Q8N4P3 DNAJC19P2-201ENST00000593340 302 ntBASIC-0.96□□□□□ -2.56
HDDC3Q8N4P3 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-0.96□□□□□ -2.56
HDDC3Q8N4P3 MIR3658-201ENST00000636291 56 ntBASIC-0.96□□□□□ -2.56
HDDC3Q8N4P3 SNORA63-201ENST00000363450 132 ntBASIC-0.97□□□□□ -2.56
HDDC3Q8N4P3 SNORA20.1-201ENST00000364790 130 ntBASIC-0.97□□□□□ -2.56
HDDC3Q8N4P3 RNU6-1318P-201ENST00000365389 103 ntBASIC-0.97□□□□□ -2.56
HDDC3Q8N4P3 Y_RNA.596-201ENST00000410462 109 ntBASIC-0.97□□□□□ -2.56
HDDC3Q8N4P3 ST7-AS2_1.1-201ENST00000622900 72 ntBASIC-0.97□□□□□ -2.56
HDDC3Q8N4P3 MIR20A-201ENST00000362279 71 ntBASIC-0.98□□□□□ -2.57
HDDC3Q8N4P3 Y_RNA.57-201ENST00000362806 113 ntBASIC-0.98□□□□□ -2.57
HDDC3Q8N4P3 SNORD115-19-201ENST00000363098 82 ntBASIC-0.98□□□□□ -2.57
HDDC3Q8N4P3 SNORD115-18-201ENST00000363293 82 ntBASIC-0.98□□□□□ -2.57
HDDC3Q8N4P3 Y_RNA.215-201ENST00000364204 112 ntBASIC-0.98□□□□□ -2.57
HDDC3Q8N4P3 Y_RNA.233-201ENST00000364407 101 ntBASIC-0.98□□□□□ -2.57
HDDC3Q8N4P3 SNORD115-17-201ENST00000364612 82 ntBASIC-0.98□□□□□ -2.57
HDDC3Q8N4P3 Y_RNA.468-201ENST00000384298 102 ntBASIC-0.98□□□□□ -2.57
HDDC3Q8N4P3 MIR759-201ENST00000390224 91 ntBASIC-0.98□□□□□ -2.57
HDDC3Q8N4P3 SPINT5P-201ENST00000448174 155 ntBASIC-0.98□□□□□ -2.57
HDDC3Q8N4P3 SCARNA21.1-201ENST00000515996 128 ntBASIC-0.98□□□□□ -2.57
HDDC3Q8N4P3 AC021753.1-201ENST00000635724 168 ntBASIC-0.98□□□□□ -2.57
HDDC3Q8N4P3 RNY1P11-201ENST00000363759 113 ntBASIC-0.99□□□□□ -2.57
HDDC3Q8N4P3 Y_RNA.447-201ENST00000384184 113 ntBASIC-0.99□□□□□ -2.57
HDDC3Q8N4P3 MIR601-201ENST00000385256 79 ntBASIC-0.99□□□□□ -2.57
HDDC3Q8N4P3 RNU6-1023P-201ENST00000516137 106 ntBASIC-0.99□□□□□ -2.57
HDDC3Q8N4P3 Y_RNA.668-201ENST00000516233 93 ntBASIC-0.99□□□□□ -2.57
HDDC3Q8N4P3 RNU6-111P-201ENST00000517179 105 ntBASIC-0.99□□□□□ -2.57
HDDC3Q8N4P3 MIR4320-201ENST00000636981 65 ntBASIC-0.99□□□□□ -2.57
HDDC3Q8N4P3 AC093726.3-201ENST00000637588 150 ntBASIC-0.99□□□□□ -2.57
HDDC3Q8N4P3 AL161932.1-201ENST00000437408 146 ntBASIC-1□□□□□ -2.57
HDDC3Q8N4P3 Y_RNA.773-201ENST00000607168 90 ntBASIC-1□□□□□ -2.57
HDDC3Q8N4P3 U6.100-201ENST00000636230 99 ntBASIC-1□□□□□ -2.57
HDDC3Q8N4P3 Y_RNA.604-201ENST00000410574 102 ntBASIC-1.01□□□□□ -2.57
HDDC3Q8N4P3 Y_RNA.644-201ENST00000459006 113 ntBASIC-1.01□□□□□ -2.57
HDDC3Q8N4P3 RNU6-1057P-201ENST00000517162 102 ntBASIC-1.01□□□□□ -2.57
HDDC3Q8N4P3 AC062037.2-201ENST00000610137 73 ntBASIC-1.01□□□□□ -2.57
HDDC3Q8N4P3 Y_RNA.812-201ENST00000610788 101 ntBASIC-1.01□□□□□ -2.57
HDDC3Q8N4P3 Y_RNA.784-201ENST00000613803 101 ntBASIC-1.01□□□□□ -2.57
HDDC3Q8N4P3 Y_RNA.787-201ENST00000616522 101 ntBASIC-1.01□□□□□ -2.57
HDDC3Q8N4P3 Y_RNA.780-201ENST00000617336 101 ntBASIC-1.01□□□□□ -2.57
HDDC3Q8N4P3 Y_RNA.801-201ENST00000619005 101 ntBASIC-1.01□□□□□ -2.57
HDDC3Q8N4P3 MIR198-201ENST00000637333 62 ntBASIC-1.01□□□□□ -2.57
HDDC3Q8N4P3 Y_RNA.213-201ENST00000364178 111 ntBASIC-1.02□□□□□ -2.57
HDDC3Q8N4P3 RNU6-901P-201ENST00000384593 106 ntBASIC-1.02□□□□□ -2.57
HDDC3Q8N4P3 MTCYBP9-201ENST00000431021 303 ntBASIC-1.02□□□□□ -2.57
HDDC3Q8N4P3 RNU7-121P-201ENST00000516604 62 ntBASIC-1.02□□□□□ -2.57
HDDC3Q8N4P3 AP000676.1-201ENST00000533307 52 ntBASIC-1.02□□□□□ -2.57
HDDC3Q8N4P3 AL512310.12-203ENST00000640543 90 ntBASIC-1.02□□□□□ -2.57
HDDC3Q8N4P3 Y_RNA.207-201ENST00000364142 106 ntBASIC-1.03□□□□□ -2.57
HDDC3Q8N4P3 SNORA7.5-201ENST00000410672 110 ntBASIC-1.03□□□□□ -2.57
HDDC3Q8N4P3 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-1.03□□□□□ -2.57
HDDC3Q8N4P3 SNORD36A-201ENST00000362874 73 ntBASIC-1.04□□□□□ -2.58
HDDC3Q8N4P3 AL445193.1-201ENST00000441183 141 ntBASIC-1.04□□□□□ -2.58
HDDC3Q8N4P3 AC244090.1-201ENST00000441884 93 ntBASIC-1.04□□□□□ -2.58
HDDC3Q8N4P3 AC022559.1-201ENST00000520905 205 ntBASIC-1.04□□□□□ -2.58
HDDC3Q8N4P3 AC007012.1-201ENST00000567192 175 ntBASIC-1.04□□□□□ -2.58
HDDC3Q8N4P3 Y_RNA.173-201ENST00000363776 113 ntBASIC-1.05□□□□□ -2.58
HDDC3Q8N4P3 RNU6-738P-201ENST00000384531 106 ntBASIC-1.05□□□□□ -2.58
HDDC3Q8N4P3 Y_RNA.680-201ENST00000516441 93 ntBASIC-1.05□□□□□ -2.58
HDDC3Q8N4P3 RNU6-90P-201ENST00000606352 106 ntBASIC-1.05□□□□□ -2.58
HDDC3Q8N4P3 MIR1255B1-201ENST00000636325 63 ntBASIC-1.05□□□□□ -2.58
HDDC3Q8N4P3 RNU6-10P-201ENST00000384036 107 ntBASIC-1.06□□□□□ -2.58
HDDC3Q8N4P3 MIR216B-201ENST00000390186 82 ntBASIC-1.06□□□□□ -2.58
HDDC3Q8N4P3 MIR6738-201ENST00000619620 64 ntBASIC-1.06□□□□□ -2.58
HDDC3Q8N4P3 RNU6-957P-201ENST00000363652 99 ntBASIC-1.07□□□□□ -2.58
HDDC3Q8N4P3 Y_RNA.246-201ENST00000364495 108 ntBASIC-1.07□□□□□ -2.58
HDDC3Q8N4P3 MIR9-2-201ENST00000384838 87 ntBASIC-1.07□□□□□ -2.58
HDDC3Q8N4P3 MIR204-201ENST00000385200 110 ntBASIC-1.07□□□□□ -2.58
HDDC3Q8N4P3 MIR652-201ENST00000385278 98 ntBASIC-1.07□□□□□ -2.58
HDDC3Q8N4P3 MT-TI-201ENST00000387365 69 ntBASIC-1.07□□□□□ -2.58
HDDC3Q8N4P3 RNU6-466P-201ENST00000391224 103 ntBASIC-1.07□□□□□ -2.58
HDDC3Q8N4P3 MIR548G-201ENST00000408442 89 ntBASIC-1.07□□□□□ -2.58
HDDC3Q8N4P3 AC072026.1-201ENST00000605023 201 ntBASIC-1.07□□□□□ -2.58
HDDC3Q8N4P3 RNU6-1244P-201ENST00000363614 108 ntBASIC-1.08□□□□□ -2.58
HDDC3Q8N4P3 RNY1P7-201ENST00000384743 110 ntBASIC-1.08□□□□□ -2.58
HDDC3Q8N4P3 SNORA3B-201ENST00000391305 131 ntBASIC-1.08□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 239.5 ms