Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 RNA5SP245-201ENST00000364239 121 ntBASIC1.15□□□□□ -2.23
SOX9P48436 RNU4-45P-201ENST00000365469 141 ntBASIC1.15□□□□□ -2.23
SOX9P48436 RNU6-466P-201ENST00000391224 103 ntBASIC1.15□□□□□ -2.23
SOX9P48436 OR2A41P-201ENST00000473586 105 ntBASIC1.15□□□□□ -2.23
SOX9P48436 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.15□□□□□ -2.23
SOX9P48436 AL353765.1-201ENST00000605514 183 ntBASIC1.15□□□□□ -2.23
SOX9P48436 SNORD36A-201ENST00000362874 73 ntBASIC1.14□□□□□ -2.23
SOX9P48436 RNU6-1260P-201ENST00000362944 107 ntBASIC1.14□□□□□ -2.23
SOX9P48436 RNU6-1229P-201ENST00000364295 107 ntBASIC1.14□□□□□ -2.23
SOX9P48436 MIR488-201ENST00000365739 83 ntBASIC1.14□□□□□ -2.23
SOX9P48436 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC1.14□□□□□ -2.23
SOX9P48436 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.14□□□□□ -2.23
SOX9P48436 VPS35-212ENST00000640313 141 ntTSL 5 BASIC1.14□□□□□ -2.23
SOX9P48436 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.14□□□□□ -2.23
SOX9P48436 Y_RNA.374-201ENST00000365606 101 ntBASIC1.13□□□□□ -2.23
SOX9P48436 AC244505.6-201ENST00000452829 130 ntBASIC1.13□□□□□ -2.23
SOX9P48436 Y_RNA.648-201ENST00000459455 110 ntBASIC1.13□□□□□ -2.23
SOX9P48436 RNU6-519P-201ENST00000410590 108 ntBASIC1.12□□□□□ -2.23
SOX9P48436 RNA5SP222-201ENST00000411039 105 ntBASIC1.12□□□□□ -2.23
SOX9P48436 AC244098.3-201ENST00000424803 96 ntBASIC1.12□□□□□ -2.23
SOX9P48436 RNA5SP436-201ENST00000516020 115 ntBASIC1.12□□□□□ -2.23
SOX9P48436 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.11□□□□□ -2.23
SOX9P48436 SNORD115-24-201ENST00000363528 82 ntBASIC1.11□□□□□ -2.23
SOX9P48436 RNU6-524P-201ENST00000384270 107 ntBASIC1.11□□□□□ -2.23
SOX9P48436 MIR644A-201ENST00000385262 94 ntBASIC1.11□□□□□ -2.23
SOX9P48436 MIR5582-201ENST00000579697 68 ntBASIC1.11□□□□□ -2.23
SOX9P48436 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC1.11□□□□□ -2.23
SOX9P48436 RNU6-1298P-201ENST00000362456 101 ntBASIC1.1□□□□□ -2.23
SOX9P48436 Y_RNA.190-201ENST00000363964 101 ntBASIC1.1□□□□□ -2.23
SOX9P48436 Y_RNA.221-201ENST00000364248 96 ntBASIC1.1□□□□□ -2.23
SOX9P48436 RNU6-65P-201ENST00000516332 98 ntBASIC1.1□□□□□ -2.23
SOX9P48436 Y_RNA.369-201ENST00000365568 117 ntBASIC1.09□□□□□ -2.23
SOX9P48436 RNY1P7-201ENST00000384743 110 ntBASIC1.09□□□□□ -2.23
SOX9P48436 MIR608-201ENST00000384820 100 ntBASIC1.09□□□□□ -2.23
SOX9P48436 MIR3678-201ENST00000578455 94 ntBASIC1.09□□□□□ -2.23
SOX9P48436 SNORD114-21-201ENST00000606412 72 ntBASIC1.09□□□□□ -2.23
SOX9P48436 MIR373-201ENST00000362273 69 ntBASIC1.08□□□□□ -2.24
SOX9P48436 MIR18A-201ENST00000362310 71 ntBASIC1.08□□□□□ -2.24
SOX9P48436 RNU6-1134P-201ENST00000365156 101 ntBASIC1.08□□□□□ -2.24
SOX9P48436 MIR1285-1-201ENST00000408593 84 ntBASIC1.08□□□□□ -2.24
SOX9P48436 Y_RNA.609-201ENST00000410669 89 ntBASIC1.08□□□□□ -2.24
SOX9P48436 snoU13.11-201ENST00000459219 104 ntBASIC1.08□□□□□ -2.24
SOX9P48436 RNU6-844P-201ENST00000517175 102 ntBASIC1.08□□□□□ -2.24
SOX9P48436 MIR4536-1-201ENST00000583537 88 ntBASIC1.08□□□□□ -2.24
SOX9P48436 NEAT1_2.1-201ENST00000620525 105 ntBASIC1.08□□□□□ -2.24
SOX9P48436 Y_RNA.43-201ENST00000362670 111 ntBASIC1.07□□□□□ -2.24
SOX9P48436 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC1.07□□□□□ -2.24
SOX9P48436 ACA64.5-201ENST00000516207 127 ntBASIC1.07□□□□□ -2.24
SOX9P48436 MIR4639-201ENST00000584938 69 ntBASIC1.07□□□□□ -2.24
SOX9P48436 AC006254.2-201ENST00000603259 279 ntBASIC1.07□□□□□ -2.24
SOX9P48436 Y_RNA.283-201ENST00000364798 112 ntBASIC1.06□□□□□ -2.24
SOX9P48436 SNORA36.2-201ENST00000384004 127 ntBASIC1.06□□□□□ -2.24
SOX9P48436 RNU6-49P-201ENST00000384256 107 ntBASIC1.06□□□□□ -2.24
SOX9P48436 RN7SL793P-201ENST00000583259 296 ntBASIC1.06□□□□□ -2.24
SOX9P48436 TRDV1-202ENST00000621643 102 ntBASIC1.06□□□□□ -2.24
SOX9P48436 RNU6-1255P-201ENST00000363434 112 ntBASIC1.05□□□□□ -2.24
SOX9P48436 RNU6-957P-201ENST00000363652 99 ntBASIC1.05□□□□□ -2.24
SOX9P48436 RNU6-294P-201ENST00000364999 102 ntBASIC1.05□□□□□ -2.24
SOX9P48436 SNORD116-22-201ENST00000384430 92 ntBASIC1.05□□□□□ -2.24
SOX9P48436 RNY1P4-201ENST00000384595 115 ntBASIC1.05□□□□□ -2.24
SOX9P48436 AC026421.1-201ENST00000519101 163 ntBASIC1.05□□□□□ -2.24
SOX9P48436 MIR3973-201ENST00000579824 107 ntBASIC1.05□□□□□ -2.24
SOX9P48436 AC211469.2-201ENST00000605461 205 ntBASIC1.05□□□□□ -2.24
SOX9P48436 MIR548L-201ENST00000408303 86 ntBASIC1.04□□□□□ -2.24
SOX9P48436 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC1.04□□□□□ -2.24
SOX9P48436 AL161932.1-201ENST00000437408 146 ntBASIC1.04□□□□□ -2.24
SOX9P48436 RNU7-104P-201ENST00000459398 79 ntBASIC1.04□□□□□ -2.24
SOX9P48436 SNORD18A-201ENST00000363753 72 ntBASIC1.03□□□□□ -2.24
SOX9P48436 MIR216A-201ENST00000385063 110 ntBASIC1.03□□□□□ -2.24
SOX9P48436 MIR5000-201ENST00000577717 103 ntBASIC1.03□□□□□ -2.24
SOX9P48436 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC1.03□□□□□ -2.24
SOX9P48436 RNU4-38P-201ENST00000364472 129 ntBASIC1.02□□□□□ -2.25
SOX9P48436 SNORD28-201ENST00000384706 75 ntBASIC1.02□□□□□ -2.25
SOX9P48436 RNU7-13P-201ENST00000516413 62 ntBASIC1.02□□□□□ -2.25
SOX9P48436 RNU4ATAC9P-201ENST00000517146 126 ntBASIC1.02□□□□□ -2.25
SOX9P48436 AC244669.1-204ENST00000621564 178 ntBASIC1.02□□□□□ -2.25
SOX9P48436 AC067863.3-201ENST00000624172 122 ntBASIC1.02□□□□□ -2.25
SOX9P48436 RNU6-110P-201ENST00000384508 104 ntBASIC1.01□□□□□ -2.25
SOX9P48436 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1□□□□□ -2.25
SOX9P48436 Y_RNA.558-201ENST00000384685 113 ntBASIC1□□□□□ -2.25
SOX9P48436 SNORD4B-201ENST00000459083 72 ntBASIC1□□□□□ -2.25
SOX9P48436 PSMC1P5-201ENST00000512850 177 ntBASIC1□□□□□ -2.25
SOX9P48436 MIR4698-201ENST00000577795 80 ntBASIC1□□□□□ -2.25
SOX9P48436 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
SOX9P48436 RNA5SP403-201ENST00000363598 108 ntBASIC0.99□□□□□ -2.25
SOX9P48436 MIR548U-201ENST00000390728 81 ntBASIC0.99□□□□□ -2.25
SOX9P48436 AL357793.1-201ENST00000448412 401 ntTSL 5 BASIC0.99□□□□□ -2.25
SOX9P48436 RNU7-85P-201ENST00000458851 63 ntBASIC0.99□□□□□ -2.25
SOX9P48436 RNU7-161P-201ENST00000517289 62 ntBASIC0.99□□□□□ -2.25
SOX9P48436 MIR4668-201ENST00000582284 70 ntBASIC0.99□□□□□ -2.25
SOX9P48436 Y_RNA.30-201ENST00000362572 97 ntBASIC0.98□□□□□ -2.25
SOX9P48436 SNORD115-44-201ENST00000365391 82 ntBASIC0.98□□□□□ -2.25
SOX9P48436 MIR140-201ENST00000385282 100 ntBASIC0.98□□□□□ -2.25
SOX9P48436 Y_RNA.596-201ENST00000410462 109 ntBASIC0.98□□□□□ -2.25
SOX9P48436 AL606490.4-201ENST00000423117 127 ntBASIC0.98□□□□□ -2.25
SOX9P48436 RNU6-1265P-201ENST00000516342 103 ntBASIC0.98□□□□□ -2.25
SOX9P48436 SCARNA16.5-201ENST00000517114 183 ntBASIC0.98□□□□□ -2.25
SOX9P48436 RNA5SP47-201ENST00000517230 109 ntBASIC0.98□□□□□ -2.25
SOX9P48436 CYP3A137P-201ENST00000562436 69 ntBASIC0.98□□□□□ -2.25
SOX9P48436 RNU6-1187P-201ENST00000364771 110 ntBASIC0.97□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms