Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC108081.1-201ENST00000604358 221 ntBASIC-0.55□□□□□ -2.5
RFX3P48380 RNU6-1244P-201ENST00000363614 108 ntBASIC-0.56□□□□□ -2.5
RFX3P48380 RNY4P3-201ENST00000365254 95 ntBASIC-0.56□□□□□ -2.5
RFX3P48380 RNU6-1036P-201ENST00000383959 104 ntBASIC-0.56□□□□□ -2.5
RFX3P48380 MIR224-201ENST00000384889 81 ntBASIC-0.56□□□□□ -2.5
RFX3P48380 MIR568-201ENST00000385036 95 ntBASIC-0.56□□□□□ -2.5
RFX3P48380 RNU6-1254P-201ENST00000391266 104 ntBASIC-0.56□□□□□ -2.5
RFX3P48380 Y_RNA.610-201ENST00000410681 103 ntBASIC-0.56□□□□□ -2.5
RFX3P48380 Y_RNA.680-201ENST00000516441 93 ntBASIC-0.56□□□□□ -2.5
RFX3P48380 Y_RNA.686-201ENST00000516548 134 ntBASIC-0.56□□□□□ -2.5
RFX3P48380 U6.100-201ENST00000636230 99 ntBASIC-0.56□□□□□ -2.5
RFX3P48380 SNORD95.1-201ENST00000364099 68 ntBASIC-0.57□□□□□ -2.5
RFX3P48380 Y_RNA.447-201ENST00000384184 113 ntBASIC-0.57□□□□□ -2.5
RFX3P48380 MT-TI-201ENST00000387365 69 ntBASIC-0.57□□□□□ -2.5
RFX3P48380 AC074198.2-201ENST00000508153 258 ntBASIC-0.57□□□□□ -2.5
RFX3P48380 RNU6-521P-201ENST00000516663 105 ntBASIC-0.57□□□□□ -2.5
RFX3P48380 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC-0.57□□□□□ -2.5
RFX3P48380 AC130289.1-201ENST00000577321 73 ntBASIC-0.57□□□□□ -2.5
RFX3P48380 MIR3658-201ENST00000636291 56 ntBASIC-0.57□□□□□ -2.5
RFX3P48380 RNU6-1163P-201ENST00000364516 107 ntBASIC-0.58□□□□□ -2.5
RFX3P48380 MIR9-2-201ENST00000384838 87 ntBASIC-0.58□□□□□ -2.5
RFX3P48380 MIR759-201ENST00000390224 91 ntBASIC-0.58□□□□□ -2.5
RFX3P48380 AL445193.1-201ENST00000441183 141 ntBASIC-0.58□□□□□ -2.5
RFX3P48380 RNU6-287P-201ENST00000516230 98 ntBASIC-0.58□□□□□ -2.5
RFX3P48380 Y_RNA.773-201ENST00000607168 90 ntBASIC-0.58□□□□□ -2.5
RFX3P48380 Y_RNA.407-201ENST00000383986 113 ntBASIC-0.59□□□□□ -2.5
RFX3P48380 MT-TY-201ENST00000387409 66 ntBASIC-0.59□□□□□ -2.5
RFX3P48380 RNU6-243P-201ENST00000391140 107 ntBASIC-0.59□□□□□ -2.5
RFX3P48380 RNU6-1135P-201ENST00000411083 103 ntBASIC-0.59□□□□□ -2.5
RFX3P48380 RNU5E-3P-201ENST00000515913 68 ntBASIC-0.59□□□□□ -2.5
RFX3P48380 RNU4ATAC4P-201ENST00000516307 126 ntBASIC-0.59□□□□□ -2.5
RFX3P48380 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.59□□□□□ -2.5
RFX3P48380 TRDV1-202ENST00000621643 102 ntBASIC-0.59□□□□□ -2.5
RFX3P48380 Y_RNA.193-201ENST00000363979 102 ntBASIC-0.6□□□□□ -2.51
RFX3P48380 Y_RNA.213-201ENST00000364178 111 ntBASIC-0.6□□□□□ -2.51
RFX3P48380 RNU6-1011P-201ENST00000384668 107 ntBASIC-0.6□□□□□ -2.51
RFX3P48380 SNORD56B-201ENST00000384713 71 ntBASIC-0.6□□□□□ -2.51
RFX3P48380 SNORD75.1-201ENST00000408373 60 ntBASIC-0.6□□□□□ -2.51
RFX3P48380 Y_RNA.596-201ENST00000410462 109 ntBASIC-0.6□□□□□ -2.51
RFX3P48380 RNA5SP66-201ENST00000517178 101 ntBASIC-0.6□□□□□ -2.51
RFX3P48380 AP000676.1-201ENST00000533307 52 ntBASIC-0.6□□□□□ -2.51
RFX3P48380 MIR3121-201ENST00000579680 77 ntBASIC-0.6□□□□□ -2.51
RFX3P48380 MIR4436A-201ENST00000585278 85 ntBASIC-0.6□□□□□ -2.51
RFX3P48380 Y_RNA.240-201ENST00000364469 95 ntBASIC-0.61□□□□□ -2.51
RFX3P48380 SNORA49-201ENST00000386157 136 ntBASIC-0.61□□□□□ -2.51
RFX3P48380 AL118496.2-201ENST00000448300 230 ntBASIC-0.61□□□□□ -2.51
RFX3P48380 Y_RNA.644-201ENST00000459006 113 ntBASIC-0.61□□□□□ -2.51
RFX3P48380 RNU6-327P-201ENST00000516270 127 ntBASIC-0.61□□□□□ -2.51
RFX3P48380 Y_RNA.674-201ENST00000516362 113 ntBASIC-0.61□□□□□ -2.51
RFX3P48380 AC022559.1-201ENST00000520905 205 ntBASIC-0.61□□□□□ -2.51
RFX3P48380 MIR1255B1-201ENST00000636325 63 ntBASIC-0.61□□□□□ -2.51
RFX3P48380 Y_RNA.198-201ENST00000364013 98 ntBASIC-0.62□□□□□ -2.51
RFX3P48380 Y_RNA.215-201ENST00000364204 112 ntBASIC-0.62□□□□□ -2.51
RFX3P48380 Y_RNA.307-201ENST00000365022 117 ntBASIC-0.62□□□□□ -2.51
RFX3P48380 MIR652-201ENST00000385278 98 ntBASIC-0.62□□□□□ -2.51
RFX3P48380 MIR216B-201ENST00000390186 82 ntBASIC-0.62□□□□□ -2.51
RFX3P48380 AC021753.1-201ENST00000635724 168 ntBASIC-0.62□□□□□ -2.51
RFX3P48380 MIR20A-201ENST00000362279 71 ntBASIC-0.63□□□□□ -2.51
RFX3P48380 Y_RNA.57-201ENST00000362806 113 ntBASIC-0.63□□□□□ -2.51
RFX3P48380 SNORD36A-201ENST00000362874 73 ntBASIC-0.63□□□□□ -2.51
RFX3P48380 RNU6-957P-201ENST00000363652 99 ntBASIC-0.63□□□□□ -2.51
RFX3P48380 Y_RNA.441-201ENST00000384123 112 ntBASIC-0.63□□□□□ -2.51
RFX3P48380 SNORA3B-201ENST00000391305 131 ntBASIC-0.63□□□□□ -2.51
RFX3P48380 RNA5SP136-201ENST00000410906 107 ntBASIC-0.63□□□□□ -2.51
RFX3P48380 AC007012.1-201ENST00000567192 175 ntBASIC-0.63□□□□□ -2.51
RFX3P48380 AC145423.2-201ENST00000610631 239 ntBASIC-0.63□□□□□ -2.51
RFX3P48380 Evf-2_5p.1-201ENST00000614213 142 ntBASIC-0.63□□□□□ -2.51
RFX3P48380 Y_RNA.207-201ENST00000364142 106 ntBASIC-0.64□□□□□ -2.51
RFX3P48380 Y_RNA.247-201ENST00000364500 92 ntBASIC-0.64□□□□□ -2.51
RFX3P48380 AC097510.1-201ENST00000510945 133 ntBASIC-0.64□□□□□ -2.51
RFX3P48380 IGKV1-22-201ENST00000524313 326 ntBASIC-0.64□□□□□ -2.51
RFX3P48380 RNU6-86P-201ENST00000606534 107 ntBASIC-0.64□□□□□ -2.51
RFX3P48380 RNU6-1313P-201ENST00000362622 102 ntBASIC-0.65□□□□□ -2.51
RFX3P48380 SNORD38.1-201ENST00000363863 68 ntBASIC-0.65□□□□□ -2.51
RFX3P48380 Y_RNA.401-201ENST00000383965 117 ntBASIC-0.65□□□□□ -2.51
RFX3P48380 SPINT5P-201ENST00000448174 155 ntBASIC-0.65□□□□□ -2.51
RFX3P48380 snoU13.13-201ENST00000458842 104 ntBASIC-0.65□□□□□ -2.51
RFX3P48380 RNU6-1045P-201ENST00000516321 107 ntBASIC-0.65□□□□□ -2.51
RFX3P48380 RNU6-1018P-201ENST00000516577 106 ntBASIC-0.65□□□□□ -2.51
RFX3P48380 AP002392.1-201ENST00000537692 208 ntBASIC-0.65□□□□□ -2.51
RFX3P48380 AC096720.1-201ENST00000604441 183 ntBASIC-0.65□□□□□ -2.51
RFX3P48380 RNU6-90P-201ENST00000606352 106 ntBASIC-0.65□□□□□ -2.51
RFX3P48380 AL391099.1-201ENST00000624635 187 ntBASIC-0.65□□□□□ -2.51
RFX3P48380 AC093726.3-201ENST00000637588 150 ntBASIC-0.65□□□□□ -2.51
RFX3P48380 RNU6-647P-201ENST00000364243 107 ntBASIC-0.66□□□□□ -2.52
RFX3P48380 RNU4-11P-201ENST00000365287 132 ntBASIC-0.66□□□□□ -2.52
RFX3P48380 RNU6-1062P-201ENST00000383908 107 ntBASIC-0.66□□□□□ -2.52
RFX3P48380 Y_RNA.452-201ENST00000384202 108 ntBASIC-0.66□□□□□ -2.52
RFX3P48380 Y_RNA.489-201ENST00000384410 101 ntBASIC-0.66□□□□□ -2.52
RFX3P48380 RNU6-735P-201ENST00000410612 107 ntBASIC-0.66□□□□□ -2.52
RFX3P48380 RNU6-1133P-201ENST00000410963 100 ntBASIC-0.66□□□□□ -2.52
RFX3P48380 AC244090.1-201ENST00000441884 93 ntBASIC-0.66□□□□□ -2.52
RFX3P48380 RNU6-1006P-201ENST00000516998 103 ntBASIC-0.66□□□□□ -2.52
RFX3P48380 MIR3681-201ENST00000580089 72 ntBASIC-0.66□□□□□ -2.52
RFX3P48380 AL512310.12-203ENST00000640543 90 ntBASIC-0.66□□□□□ -2.52
RFX3P48380 Y_RNA.272-201ENST00000364696 102 ntBASIC-0.67□□□□□ -2.52
RFX3P48380 RNU6-915P-201ENST00000364943 103 ntBASIC-0.67□□□□□ -2.52
RFX3P48380 Y_RNA.297-201ENST00000364950 91 ntBASIC-0.67□□□□□ -2.52
RFX3P48380 MIR582-201ENST00000365731 98 ntBASIC-0.67□□□□□ -2.52
RFX3P48380 RNU6-196P-201ENST00000384315 107 ntBASIC-0.67□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 210.5 ms