Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 RNU6-766P-201ENST00000362478 107 ntBASIC-3.46□□□□□ -2.96
CCDC88BA6NC98 Y_RNA.135-201ENST00000363439 95 ntBASIC-3.46□□□□□ -2.96
CCDC88BA6NC98 SNORD42A-201ENST00000459584 64 ntBASIC-3.46□□□□□ -2.96
CCDC88BA6NC98 SNX3P1Y-201ENST00000615757 176 ntBASIC-3.46□□□□□ -2.96
CCDC88BA6NC98 AC007485.1-201ENST00000616755 206 ntBASIC-3.46□□□□□ -2.96
CCDC88BA6NC98 Y_RNA.199-201ENST00000364014 102 ntBASIC-3.47□□□□□ -2.96
CCDC88BA6NC98 AL365205.2-201ENST00000594586 68 ntBASIC-3.47□□□□□ -2.96
CCDC88BA6NC98 AL021368.1-201ENST00000607490 540 ntBASIC-3.47□□□□□ -2.96
CCDC88BA6NC98 TPTEP1-208ENST00000636884 213 ntBASIC-3.47□□□□□ -2.96
CCDC88BA6NC98 Y_RNA.24-201ENST00000362508 103 ntBASIC-3.47□□□□□ -2.97
CCDC88BA6NC98 AC097484.2-201ENST00000509147 251 ntBASIC-3.47□□□□□ -2.97
CCDC88BA6NC98 RNU4ATAC9P-201ENST00000517146 126 ntBASIC-3.47□□□□□ -2.97
CCDC88BA6NC98 Y_RNA.473-201ENST00000384333 102 ntBASIC-3.48□□□□□ -2.97
CCDC88BA6NC98 MIR3913-1-201ENST00000577744 102 ntBASIC-3.48□□□□□ -2.97
CCDC88BA6NC98 Y_RNA.313-201ENST00000365095 103 ntBASIC-3.49□□□□□ -2.97
CCDC88BA6NC98 RNU6-690P-201ENST00000365242 106 ntBASIC-3.49□□□□□ -2.97
CCDC88BA6NC98 Y_RNA.569-201ENST00000384749 103 ntBASIC-3.49□□□□□ -2.97
CCDC88BA6NC98 Y_RNA.592-201ENST00000410274 109 ntBASIC-3.49□□□□□ -2.97
CCDC88BA6NC98 snoU13.17-201ENST00000458802 104 ntBASIC-3.49□□□□□ -2.97
CCDC88BA6NC98 Y_RNA.658-201ENST00000515990 97 ntBASIC-3.49□□□□□ -2.97
CCDC88BA6NC98 RNU6-1234P-201ENST00000516877 103 ntBASIC-3.49□□□□□ -2.97
CCDC88BA6NC98 IGHVII-40-1-201ENST00000517316 58 ntBASIC-3.49□□□□□ -2.97
CCDC88BA6NC98 AC006006.1-201ENST00000603082 144 ntBASIC-3.49□□□□□ -2.97
CCDC88BA6NC98 RNU6-99P-201ENST00000364721 107 ntBASIC-3.5□□□□□ -2.97
CCDC88BA6NC98 Y_RNA.519-201ENST00000384553 102 ntBASIC-3.5□□□□□ -2.97
CCDC88BA6NC98 MIR203A-201ENST00000384836 110 ntBASIC-3.5□□□□□ -2.97
CCDC88BA6NC98 MIR514A2-201ENST00000385131 88 ntBASIC-3.5□□□□□ -2.97
CCDC88BA6NC98 MIR514A3-201ENST00000385132 88 ntBASIC-3.5□□□□□ -2.97
CCDC88BA6NC98 AC009161.1-201ENST00000417306 376 ntBASIC-3.5□□□□□ -2.97
CCDC88BA6NC98 RNU6-518P-201ENST00000516056 96 ntBASIC-3.5□□□□□ -2.97
CCDC88BA6NC98 RNU6-764P-201ENST00000516396 105 ntBASIC-3.5□□□□□ -2.97
CCDC88BA6NC98 RNU6-978P-201ENST00000364371 103 ntBASIC-3.51□□□□□ -2.97
CCDC88BA6NC98 Y_RNA.344-201ENST00000365381 112 ntBASIC-3.51□□□□□ -2.97
CCDC88BA6NC98 Y_RNA.419-201ENST00000384041 102 ntBASIC-3.51□□□□□ -2.97
CCDC88BA6NC98 MT-TT-201ENST00000387460 66 ntBASIC-3.51□□□□□ -2.97
CCDC88BA6NC98 RNU6-1267P-201ENST00000410747 107 ntBASIC-3.51□□□□□ -2.97
CCDC88BA6NC98 Y_RNA.721-201ENST00000517207 102 ntBASIC-3.51□□□□□ -2.97
CCDC88BA6NC98 MIR526A2-201ENST00000390198 65 ntBASIC-3.52□□□□□ -2.97
CCDC88BA6NC98 Y_RNA.793-201ENST00000411222 111 ntBASIC-3.52□□□□□ -2.97
CCDC88BA6NC98 Y_RNA.201-201ENST00000364052 96 ntBASIC-3.53□□□□□ -2.97
CCDC88BA6NC98 RNU6-246P-201ENST00000384702 107 ntBASIC-3.53□□□□□ -2.97
CCDC88BA6NC98 RNU6-630P-201ENST00000391258 106 ntBASIC-3.53□□□□□ -2.97
CCDC88BA6NC98 AC019235.1-201ENST00000503847 207 ntBASIC-3.53□□□□□ -2.97
CCDC88BA6NC98 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC-3.53□□□□□ -2.97
CCDC88BA6NC98 Y_RNA.82-201ENST00000363000 102 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.92-201ENST00000363043 102 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.235-201ENST00000364412 102 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.306-201ENST00000365015 102 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.308-201ENST00000365043 101 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.312-201ENST00000365089 102 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.322-201ENST00000365151 102 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 RNU6-1283P-201ENST00000365314 105 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.462-201ENST00000384268 102 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 RNU6-1177P-201ENST00000391058 104 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.615-201ENST00000410769 117 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 AC138393.2-201ENST00000414742 246 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 RNU7-24P-201ENST00000458867 62 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.650-201ENST00000459002 102 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.647-201ENST00000459194 112 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.640-201ENST00000459296 112 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 MTND3P22-201ENST00000510932 243 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 RNU6-358P-201ENST00000516564 75 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 RNU6-861P-201ENST00000516745 106 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.777-201ENST00000516982 102 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 MIR5688-201ENST00000580619 83 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 MIR3140-201ENST00000583685 90 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.771-201ENST00000598668 102 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 AC119751.7-201ENST00000600494 245 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.803-201ENST00000614432 112 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.815-201ENST00000616655 112 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.795-201ENST00000619475 112 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.789-201ENST00000622480 102 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.827-201ENST00000638104 112 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 MIRLET7F1-201ENST00000362202 87 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 RNU7-169P-201ENST00000459456 61 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 AC022079.1-201ENST00000621546 602 ntBASIC-3.54□□□□□ -2.98
CCDC88BA6NC98 RNU6-1257P-201ENST00000384625 110 ntBASIC-3.55□□□□□ -2.98
CCDC88BA6NC98 RNU7-164P-201ENST00000459221 62 ntBASIC-3.55□□□□□ -2.98
CCDC88BA6NC98 RNU6-864P-201ENST00000516256 108 ntBASIC-3.55□□□□□ -2.98
CCDC88BA6NC98 RNU6-273P-201ENST00000516937 96 ntBASIC-3.55□□□□□ -2.98
CCDC88BA6NC98 PISRT1.1-201ENST00000616930 107 ntBASIC-3.55□□□□□ -2.98
CCDC88BA6NC98 AC090617.10-201ENST00000624308 134 ntBASIC-3.55□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.483-201ENST00000384380 101 ntBASIC-3.56□□□□□ -2.98
CCDC88BA6NC98 HSPE1P25-201ENST00000455484 251 ntBASIC-3.56□□□□□ -2.98
CCDC88BA6NC98 RNU6-521P-201ENST00000516663 105 ntBASIC-3.56□□□□□ -2.98
CCDC88BA6NC98 RNU6-1121P-201ENST00000516802 109 ntBASIC-3.56□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.527-201ENST00000384573 102 ntBASIC-3.57□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.582-201ENST00000391023 95 ntBASIC-3.57□□□□□ -2.98
CCDC88BA6NC98 RNU6-248P-201ENST00000410720 107 ntBASIC-3.57□□□□□ -2.98
CCDC88BA6NC98 MTCO2P19-201ENST00000427513 598 ntBASIC-3.57□□□□□ -2.98
CCDC88BA6NC98 RNU6-1213P-201ENST00000517075 94 ntBASIC-3.57□□□□□ -2.98
CCDC88BA6NC98 MIR4536-1-201ENST00000583537 88 ntBASIC-3.57□□□□□ -2.98
CCDC88BA6NC98 SMAD5-AS1_3.1-201ENST00000614187 124 ntBASIC-3.57□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.424-201ENST00000384063 103 ntBASIC-3.58□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.463-201ENST00000384271 102 ntBASIC-3.58□□□□□ -2.98
CCDC88BA6NC98 AC021443.1-201ENST00000604478 211 ntBASIC-3.58□□□□□ -2.98
CCDC88BA6NC98 SNORA63.2-201ENST00000362603 126 ntBASIC-3.59□□□□□ -2.98
CCDC88BA6NC98 MIR6509-201ENST00000614603 85 ntBASIC-3.59□□□□□ -2.98
CCDC88BA6NC98 AC012531.4-201ENST00000616509 177 ntBASIC-3.59□□□□□ -2.98
CCDC88BA6NC98 Y_RNA.8-201ENST00000362353 102 ntBASIC-3.6□□□□□ -2.99
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms