Protein–RNA interactions for Protein: Q9H4D5

NXF3, Nuclear RNA export factor 3, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NXF3Q9H4D5 SNORA8.2-201ENST00000384372 139 ntBASIC0.27□□□□□ -2.37
NXF3Q9H4D5 Y_RNA.536-201ENST00000384621 113 ntBASIC0.27□□□□□ -2.37
NXF3Q9H4D5 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.27□□□□□ -2.37
NXF3Q9H4D5 AL603914.1-201ENST00000401964 204 ntBASIC0.27□□□□□ -2.37
NXF3Q9H4D5 RNU7-123P-201ENST00000515911 60 ntBASIC0.27□□□□□ -2.37
NXF3Q9H4D5 RNU5E-3P-201ENST00000515913 68 ntBASIC0.27□□□□□ -2.37
NXF3Q9H4D5 SNORA25.12-201ENST00000516202 82 ntBASIC0.27□□□□□ -2.37
NXF3Q9H4D5 RNU6-469P-201ENST00000516253 101 ntBASIC0.27□□□□□ -2.37
NXF3Q9H4D5 SNORA81.3-201ENST00000517283 198 ntBASIC0.27□□□□□ -2.37
NXF3Q9H4D5 AC021443.1-201ENST00000604478 211 ntBASIC0.27□□□□□ -2.37
NXF3Q9H4D5 FAM13A-AS1_1.1-201ENST00000612555 119 ntBASIC0.27□□□□□ -2.37
NXF3Q9H4D5 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.27□□□□□ -2.37
NXF3Q9H4D5 U6.109-201ENST00000636749 87 ntBASIC0.27□□□□□ -2.37
NXF3Q9H4D5 SNORD118-201ENST00000363593 134 ntBASIC0.26□□□□□ -2.37
NXF3Q9H4D5 Y_RNA.272-201ENST00000364696 102 ntBASIC0.26□□□□□ -2.37
NXF3Q9H4D5 RNU4-11P-201ENST00000365287 132 ntBASIC0.26□□□□□ -2.37
NXF3Q9H4D5 RNU6-1327P-201ENST00000365302 105 ntBASIC0.26□□□□□ -2.37
NXF3Q9H4D5 RNU6-1130P-201ENST00000365434 107 ntBASIC0.26□□□□□ -2.37
NXF3Q9H4D5 SNORD71-201ENST00000411292 86 ntBASIC0.26□□□□□ -2.37
NXF3Q9H4D5 RNU7-164P-201ENST00000459221 62 ntBASIC0.26□□□□□ -2.37
NXF3Q9H4D5 RNU6-135P-201ENST00000516769 101 ntBASIC0.26□□□□□ -2.37
NXF3Q9H4D5 Y_RNA.697-201ENST00000516776 113 ntBASIC0.26□□□□□ -2.37
NXF3Q9H4D5 RNU7-137P-201ENST00000516788 62 ntBASIC0.26□□□□□ -2.37
NXF3Q9H4D5 AC004792.1-201ENST00000614523 137 ntBASIC0.26□□□□□ -2.37
NXF3Q9H4D5 SNORD44.1-201ENST00000363202 61 ntBASIC0.25□□□□□ -2.37
NXF3Q9H4D5 SNORD114-10-201ENST00000363409 72 ntBASIC0.25□□□□□ -2.37
NXF3Q9H4D5 Y_RNA.299-201ENST00000364973 94 ntBASIC0.25□□□□□ -2.37
NXF3Q9H4D5 RNU6-535P-201ENST00000384722 107 ntBASIC0.25□□□□□ -2.37
NXF3Q9H4D5 RNU6-1104P-201ENST00000384723 104 ntBASIC0.25□□□□□ -2.37
NXF3Q9H4D5 RNU6-1307P-201ENST00000391012 103 ntBASIC0.25□□□□□ -2.37
NXF3Q9H4D5 RNU6-460P-201ENST00000391158 108 ntBASIC0.25□□□□□ -2.37
NXF3Q9H4D5 SUMO1P3-201ENST00000439961 304 ntBASIC0.25□□□□□ -2.37
NXF3Q9H4D5 Y_RNA.690-201ENST00000516603 95 ntBASIC0.25□□□□□ -2.37
NXF3Q9H4D5 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.25□□□□□ -2.37
NXF3Q9H4D5 DEFB131E-201ENST00000532329 154 ntBASIC0.25□□□□□ -2.37
NXF3Q9H4D5 AC112693.2-201ENST00000556538 232 ntBASIC0.25□□□□□ -2.37
NXF3Q9H4D5 AC138749.4-201ENST00000563970 127 ntBASIC0.25□□□□□ -2.37
NXF3Q9H4D5 RNU4-58P-201ENST00000363192 141 ntBASIC0.24□□□□□ -2.37
NXF3Q9H4D5 AC023932.2-201ENST00000603176 175 ntBASIC0.24□□□□□ -2.37
NXF3Q9H4D5 AC098479.1-201ENST00000609225 154 ntBASIC0.24□□□□□ -2.37
NXF3Q9H4D5 RNA5SP457-201ENST00000363657 124 ntBASIC0.23□□□□□ -2.37
NXF3Q9H4D5 RNU6-151P-201ENST00000364158 107 ntBASIC0.23□□□□□ -2.37
NXF3Q9H4D5 Y_RNA.294-201ENST00000364916 102 ntBASIC0.23□□□□□ -2.37
NXF3Q9H4D5 Y_RNA.298-201ENST00000364960 107 ntBASIC0.23□□□□□ -2.37
NXF3Q9H4D5 RNU6-716P-201ENST00000365621 103 ntBASIC0.23□□□□□ -2.37
NXF3Q9H4D5 Y_RNA.580-201ENST00000391004 95 ntBASIC0.23□□□□□ -2.37
NXF3Q9H4D5 MIR1197-201ENST00000408818 88 ntBASIC0.23□□□□□ -2.37
NXF3Q9H4D5 RNU4-69P-201ENST00000410677 143 ntBASIC0.23□□□□□ -2.37
NXF3Q9H4D5 SNRPGP12-201ENST00000449481 213 ntBASIC0.23□□□□□ -2.37
NXF3Q9H4D5 RNU7-197P-201ENST00000458836 62 ntBASIC0.23□□□□□ -2.37
NXF3Q9H4D5 RNU6-863P-201ENST00000515989 104 ntBASIC0.23□□□□□ -2.37
NXF3Q9H4D5 SNORA62.5-201ENST00000516634 120 ntBASIC0.23□□□□□ -2.37
NXF3Q9H4D5 IGKV1-22-201ENST00000524313 326 ntBASIC0.23□□□□□ -2.37
NXF3Q9H4D5 MIR6828-201ENST00000636181 60 ntBASIC0.23□□□□□ -2.37
NXF3Q9H4D5 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.23□□□□□ -2.37
NXF3Q9H4D5 Y_RNA.8-201ENST00000362353 102 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 Y_RNA.115-201ENST00000363272 98 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 RNU4-67P-201ENST00000364569 141 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 RNY1P2-201ENST00000364820 117 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 RNU6-187P-201ENST00000384139 106 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 RNU6-804P-201ENST00000384286 107 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 SNORD28-201ENST00000384706 75 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 MT-TI-201ENST00000387365 69 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 RNU6-1321P-201ENST00000390905 107 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 RNU6-394P-201ENST00000410735 107 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 AC108059.2-201ENST00000434626 151 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 AC069271.1-201ENST00000445577 156 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 RNA5SP272-201ENST00000516095 111 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 RNY4P20-201ENST00000516678 93 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 RNA5SP268-201ENST00000516828 124 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 MIR5093-201ENST00000583199 100 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 MIR4639-201ENST00000584938 69 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 MIR7107-201ENST00000611489 80 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 MIR6718-201ENST00000616153 80 ntBASIC0.22□□□□□ -2.37
NXF3Q9H4D5 Y_RNA.119-201ENST00000363301 96 ntBASIC0.21□□□□□ -2.38
NXF3Q9H4D5 SNORD116-18-201ENST00000383961 92 ntBASIC0.21□□□□□ -2.38
NXF3Q9H4D5 MIRLET7F2-201ENST00000385277 83 ntBASIC0.21□□□□□ -2.38
NXF3Q9H4D5 AC108740.1-201ENST00000498629 225 ntBASIC0.21□□□□□ -2.38
NXF3Q9H4D5 RNU6-182P-201ENST00000516970 105 ntBASIC0.21□□□□□ -2.38
NXF3Q9H4D5 SCARNA16.5-201ENST00000517114 183 ntBASIC0.21□□□□□ -2.38
NXF3Q9H4D5 RNA5SP47-201ENST00000517230 109 ntBASIC0.21□□□□□ -2.38
NXF3Q9H4D5 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.21□□□□□ -2.38
NXF3Q9H4D5 AL137067.1-201ENST00000615933 120 ntBASIC0.21□□□□□ -2.38
NXF3Q9H4D5 Y_RNA.778-201ENST00000620203 90 ntBASIC0.21□□□□□ -2.38
NXF3Q9H4D5 Y_RNA.56-201ENST00000362798 112 ntBASIC0.2□□□□□ -2.38
NXF3Q9H4D5 Y_RNA.150-201ENST00000363562 102 ntBASIC0.2□□□□□ -2.38
NXF3Q9H4D5 RNU6-1229P-201ENST00000364295 107 ntBASIC0.2□□□□□ -2.38
NXF3Q9H4D5 RNU6-449P-201ENST00000383914 107 ntBASIC0.2□□□□□ -2.38
NXF3Q9H4D5 RNU6-815P-201ENST00000384080 113 ntBASIC0.2□□□□□ -2.38
NXF3Q9H4D5 RNU6-429P-201ENST00000384582 108 ntBASIC0.2□□□□□ -2.38
NXF3Q9H4D5 MIR206-201ENST00000384872 86 ntBASIC0.2□□□□□ -2.38
NXF3Q9H4D5 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.2□□□□□ -2.38
NXF3Q9H4D5 RNU2-59P-201ENST00000410482 191 ntBASIC0.2□□□□□ -2.38
NXF3Q9H4D5 MIR4752-201ENST00000579672 72 ntBASIC0.2□□□□□ -2.38
NXF3Q9H4D5 AC090425.1-201ENST00000610007 140 ntBASIC0.2□□□□□ -2.38
NXF3Q9H4D5 MIR101-2-201ENST00000362195 79 ntBASIC0.19□□□□□ -2.38
NXF3Q9H4D5 RNU6-1099P-201ENST00000363533 107 ntBASIC0.19□□□□□ -2.38
NXF3Q9H4D5 RNU6-915P-201ENST00000364943 103 ntBASIC0.19□□□□□ -2.38
NXF3Q9H4D5 Y_RNA.398-201ENST00000383952 99 ntBASIC0.19□□□□□ -2.38
NXF3Q9H4D5 Y_RNA.448-201ENST00000384185 108 ntBASIC0.19□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 194 ms