Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 RNU6-765P-201ENST00000516916 99 ntBASIC0.37□□□□□ -2.35
NKX6-3A6NJ46 AL137067.1-201ENST00000615933 120 ntBASIC0.37□□□□□ -2.35
NKX6-3A6NJ46 uc_338.16-201ENST00000621804 95 ntBASIC0.37□□□□□ -2.35
NKX6-3A6NJ46 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.36□□□□□ -2.35
NKX6-3A6NJ46 RNU4-58P-201ENST00000363192 141 ntBASIC0.36□□□□□ -2.35
NKX6-3A6NJ46 SNORD18A-201ENST00000363753 72 ntBASIC0.36□□□□□ -2.35
NKX6-3A6NJ46 RNU6-915P-201ENST00000364943 103 ntBASIC0.36□□□□□ -2.35
NKX6-3A6NJ46 Y_RNA.398-201ENST00000383952 99 ntBASIC0.36□□□□□ -2.35
NKX6-3A6NJ46 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC0.36□□□□□ -2.35
NKX6-3A6NJ46 MIR513C-201ENST00000401352 84 ntBASIC0.36□□□□□ -2.35
NKX6-3A6NJ46 RNU4-69P-201ENST00000410677 143 ntBASIC0.36□□□□□ -2.35
NKX6-3A6NJ46 SNORA40.8-201ENST00000411034 126 ntBASIC0.36□□□□□ -2.35
NKX6-3A6NJ46 SUMO1P3-201ENST00000439961 304 ntBASIC0.36□□□□□ -2.35
NKX6-3A6NJ46 AC138749.4-201ENST00000563970 127 ntBASIC0.36□□□□□ -2.35
NKX6-3A6NJ46 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.36□□□□□ -2.35
NKX6-3A6NJ46 MIR101-2-201ENST00000362195 79 ntBASIC0.35□□□□□ -2.35
NKX6-3A6NJ46 Y_RNA.119-201ENST00000363301 96 ntBASIC0.35□□□□□ -2.35
NKX6-3A6NJ46 SNORA36.1-201ENST00000363424 132 ntBASIC0.35□□□□□ -2.35
NKX6-3A6NJ46 SNORA63.5-201ENST00000363548 123 ntBASIC0.35□□□□□ -2.35
NKX6-3A6NJ46 Y_RNA.466-201ENST00000384294 113 ntBASIC0.35□□□□□ -2.35
NKX6-3A6NJ46 SNORA8.2-201ENST00000384372 139 ntBASIC0.35□□□□□ -2.35
NKX6-3A6NJ46 RNU6-1104P-201ENST00000384723 104 ntBASIC0.35□□□□□ -2.35
NKX6-3A6NJ46 MIR518A1-201ENST00000385068 85 ntBASIC0.35□□□□□ -2.35
NKX6-3A6NJ46 RNU7-197P-201ENST00000458836 62 ntBASIC0.35□□□□□ -2.35
NKX6-3A6NJ46 MIR103A1-201ENST00000362165 78 ntBASIC0.34□□□□□ -2.36
NKX6-3A6NJ46 MIRLET7D-201ENST00000362263 87 ntBASIC0.34□□□□□ -2.36
NKX6-3A6NJ46 RNA5SP245-201ENST00000364239 121 ntBASIC0.34□□□□□ -2.36
NKX6-3A6NJ46 Y_RNA.294-201ENST00000364916 102 ntBASIC0.34□□□□□ -2.36
NKX6-3A6NJ46 RNU6-394P-201ENST00000410735 107 ntBASIC0.34□□□□□ -2.36
NKX6-3A6NJ46 RNA5SP272-201ENST00000516095 111 ntBASIC0.34□□□□□ -2.36
NKX6-3A6NJ46 IGHVII-40-1-201ENST00000517316 58 ntBASIC0.34□□□□□ -2.36
NKX6-3A6NJ46 MIR3144-201ENST00000579460 79 ntBASIC0.34□□□□□ -2.36
NKX6-3A6NJ46 AC243829.6-201ENST00000612652 106 ntBASIC0.34□□□□□ -2.36
NKX6-3A6NJ46 Y_RNA.36-201ENST00000362602 112 ntBASIC0.33□□□□□ -2.36
NKX6-3A6NJ46 SNORD114-10-201ENST00000363409 72 ntBASIC0.33□□□□□ -2.36
NKX6-3A6NJ46 SNORD114-23-201ENST00000363536 72 ntBASIC0.33□□□□□ -2.36
NKX6-3A6NJ46 Y_RNA.174-201ENST00000363781 105 ntBASIC0.33□□□□□ -2.36
NKX6-3A6NJ46 RNU6-1229P-201ENST00000364295 107 ntBASIC0.33□□□□□ -2.36
NKX6-3A6NJ46 Y_RNA.448-201ENST00000384185 108 ntBASIC0.33□□□□□ -2.36
NKX6-3A6NJ46 RNU6-1321P-201ENST00000390905 107 ntBASIC0.33□□□□□ -2.36
NKX6-3A6NJ46 SNORD77B-201ENST00000391112 67 ntBASIC0.33□□□□□ -2.36
NKX6-3A6NJ46 MTND5P41-201ENST00000517498 206 ntBASIC0.33□□□□□ -2.36
NKX6-3A6NJ46 VTRNA1-3-201ENST00000365645 89 ntBASIC0.32□□□□□ -2.36
NKX6-3A6NJ46 Y_RNA.580-201ENST00000391004 95 ntBASIC0.32□□□□□ -2.36
NKX6-3A6NJ46 Y_RNA.692-201ENST00000516627 105 ntBASIC0.32□□□□□ -2.36
NKX6-3A6NJ46 RNA5SP268-201ENST00000516828 124 ntBASIC0.32□□□□□ -2.36
NKX6-3A6NJ46 FTX_2.1-201ENST00000618816 94 ntBASIC0.32□□□□□ -2.36
NKX6-3A6NJ46 AC010487.4-201ENST00000637027 61 ntBASIC0.32□□□□□ -2.36
NKX6-3A6NJ46 SNORD118-201ENST00000363593 134 ntBASIC0.31□□□□□ -2.36
NKX6-3A6NJ46 RNY1P2-201ENST00000364820 117 ntBASIC0.31□□□□□ -2.36
NKX6-3A6NJ46 Y_RNA.299-201ENST00000364973 94 ntBASIC0.31□□□□□ -2.36
NKX6-3A6NJ46 Y_RNA.420-201ENST00000384043 110 ntBASIC0.31□□□□□ -2.36
NKX6-3A6NJ46 RNU6-886P-201ENST00000384319 105 ntBASIC0.31□□□□□ -2.36
NKX6-3A6NJ46 RNU6-616P-201ENST00000384353 107 ntBASIC0.31□□□□□ -2.36
NKX6-3A6NJ46 RNY1P4-201ENST00000384595 115 ntBASIC0.31□□□□□ -2.36
NKX6-3A6NJ46 MIR206-201ENST00000384872 86 ntBASIC0.31□□□□□ -2.36
NKX6-3A6NJ46 PCNPP3-201ENST00000393579 471 ntBASIC0.31□□□□□ -2.36
NKX6-3A6NJ46 RNA5SP227-201ENST00000516184 113 ntBASIC0.31□□□□□ -2.36
NKX6-3A6NJ46 AP001328.1-201ENST00000528550 176 ntBASIC0.31□□□□□ -2.36
NKX6-3A6NJ46 MIR3121-201ENST00000579680 77 ntBASIC0.31□□□□□ -2.36
NKX6-3A6NJ46 MIR548X2-201ENST00000579776 100 ntBASIC0.31□□□□□ -2.36
NKX6-3A6NJ46 AC021753.1-201ENST00000635724 168 ntBASIC0.31□□□□□ -2.36
NKX6-3A6NJ46 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.31□□□□□ -2.36
NKX6-3A6NJ46 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.3□□□□□ -2.36
NKX6-3A6NJ46 Y_RNA.49-201ENST00000362714 112 ntBASIC0.3□□□□□ -2.36
NKX6-3A6NJ46 SNORD44.1-201ENST00000363202 61 ntBASIC0.3□□□□□ -2.36
NKX6-3A6NJ46 Y_RNA.114-201ENST00000363265 113 ntBASIC0.3□□□□□ -2.36
NKX6-3A6NJ46 RNU6-1307P-201ENST00000391012 103 ntBASIC0.3□□□□□ -2.36
NKX6-3A6NJ46 SNRPGP12-201ENST00000449481 213 ntBASIC0.3□□□□□ -2.36
NKX6-3A6NJ46 RNU7-6P-201ENST00000516845 62 ntBASIC0.3□□□□□ -2.36
NKX6-3A6NJ46 IGKV1-22-201ENST00000524313 326 ntBASIC0.3□□□□□ -2.36
NKX6-3A6NJ46 MIR4500-201ENST00000579472 76 ntBASIC0.3□□□□□ -2.36
NKX6-3A6NJ46 AC098479.1-201ENST00000609225 154 ntBASIC0.3□□□□□ -2.36
NKX6-3A6NJ46 Y_RNA.215-201ENST00000364204 112 ntBASIC0.29□□□□□ -2.36
NKX6-3A6NJ46 MIR1263-201ENST00000408324 86 ntBASIC0.29□□□□□ -2.36
NKX6-3A6NJ46 AC069271.1-201ENST00000445577 156 ntBASIC0.29□□□□□ -2.36
NKX6-3A6NJ46 AC244669.1-204ENST00000621564 178 ntBASIC0.29□□□□□ -2.36
NKX6-3A6NJ46 Y_RNA.400-201ENST00000383963 111 ntBASIC0.28□□□□□ -2.36
NKX6-3A6NJ46 SNORD28-201ENST00000384706 75 ntBASIC0.28□□□□□ -2.36
NKX6-3A6NJ46 MIR7-2-201ENST00000384970 110 ntBASIC0.28□□□□□ -2.36
NKX6-3A6NJ46 MIRLET7F2-201ENST00000385277 83 ntBASIC0.28□□□□□ -2.36
NKX6-3A6NJ46 RNU7-48P-201ENST00000458875 63 ntBASIC0.28□□□□□ -2.36
NKX6-3A6NJ46 MIR7107-201ENST00000611489 80 ntBASIC0.28□□□□□ -2.36
NKX6-3A6NJ46 RNA5SP62-201ENST00000363457 110 ntBASIC0.27□□□□□ -2.37
NKX6-3A6NJ46 RNU6-716P-201ENST00000365621 103 ntBASIC0.27□□□□□ -2.37
NKX6-3A6NJ46 MIR193B-201ENST00000384907 83 ntBASIC0.27□□□□□ -2.37
NKX6-3A6NJ46 MIR569-201ENST00000385228 96 ntBASIC0.27□□□□□ -2.37
NKX6-3A6NJ46 MT-TI-201ENST00000387365 69 ntBASIC0.27□□□□□ -2.37
NKX6-3A6NJ46 RNU7-2P-201ENST00000516096 62 ntBASIC0.27□□□□□ -2.37
NKX6-3A6NJ46 RNA5SP134-201ENST00000516492 96 ntBASIC0.27□□□□□ -2.37
NKX6-3A6NJ46 SCARNA16.5-201ENST00000517114 183 ntBASIC0.27□□□□□ -2.37
NKX6-3A6NJ46 RNA5SP47-201ENST00000517230 109 ntBASIC0.27□□□□□ -2.37
NKX6-3A6NJ46 MIR6779-201ENST00000617283 64 ntBASIC0.27□□□□□ -2.37
NKX6-3A6NJ46 SNORD115-24-201ENST00000363528 82 ntBASIC0.26□□□□□ -2.37
NKX6-3A6NJ46 RNU6-865P-201ENST00000364772 107 ntBASIC0.26□□□□□ -2.37
NKX6-3A6NJ46 BX276092.1-201ENST00000427368 251 ntBASIC0.26□□□□□ -2.37
NKX6-3A6NJ46 AC073261.1-201ENST00000429409 121 ntBASIC0.26□□□□□ -2.37
NKX6-3A6NJ46 RN7SKP19-201ENST00000516016 252 ntBASIC0.26□□□□□ -2.37
NKX6-3A6NJ46 RNU6-426P-201ENST00000516464 97 ntBASIC0.26□□□□□ -2.37
NKX6-3A6NJ46 RNU6-135P-201ENST00000516769 101 ntBASIC0.26□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 169.6 ms