Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 VPS35-212ENST00000640313 141 ntTSL 5 BASIC0.16□□□□□ -2.38
SHMT2P34897 AL596211.1-201ENST00000569873 2277 ntBASIC0.16□□□□□ -2.38
SHMT2P34897 RNU6-349P-201ENST00000362402 107 ntBASIC0.15□□□□□ -2.39
SHMT2P34897 RNU6-797P-201ENST00000363101 109 ntBASIC0.15□□□□□ -2.39
SHMT2P34897 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.15□□□□□ -2.39
SHMT2P34897 Y_RNA.588-201ENST00000391254 102 ntBASIC0.15□□□□□ -2.39
SHMT2P34897 RNU4-43P-201ENST00000410628 137 ntBASIC0.15□□□□□ -2.39
SHMT2P34897 RPL39P25-201ENST00000449384 154 ntBASIC0.15□□□□□ -2.39
SHMT2P34897 AC141846.1-201ENST00000568348 142 ntBASIC0.15□□□□□ -2.39
SHMT2P34897 MIR1273G-201ENST00000577677 100 ntBASIC0.15□□□□□ -2.39
SHMT2P34897 AL442067.1-201ENST00000613261 223 ntBASIC0.15□□□□□ -2.39
SHMT2P34897 NEAT1_2.1-201ENST00000620525 105 ntBASIC0.15□□□□□ -2.39
SHMT2P34897 Y_RNA.13-201ENST00000362403 112 ntBASIC0.14□□□□□ -2.39
SHMT2P34897 Y_RNA.32-201ENST00000362589 110 ntBASIC0.14□□□□□ -2.39
SHMT2P34897 RNU6-728P-201ENST00000365375 104 ntBASIC0.14□□□□□ -2.39
SHMT2P34897 Y_RNA.483-201ENST00000384380 101 ntBASIC0.14□□□□□ -2.39
SHMT2P34897 MT-TW-201ENST00000387382 68 ntBASIC0.14□□□□□ -2.39
SHMT2P34897 SNORA79-201ENST00000408376 140 ntBASIC0.14□□□□□ -2.39
SHMT2P34897 Y_RNA.618-201ENST00000410949 107 ntBASIC0.14□□□□□ -2.39
SHMT2P34897 Y_RNA.679-201ENST00000516416 91 ntBASIC0.14□□□□□ -2.39
SHMT2P34897 MIR4514-201ENST00000581410 57 ntBASIC0.14□□□□□ -2.39
SHMT2P34897 AC023932.2-201ENST00000603176 175 ntBASIC0.14□□□□□ -2.39
SHMT2P34897 MIR6082-201ENST00000613604 109 ntBASIC0.14□□□□□ -2.39
SHMT2P34897 SNORA22.1-201ENST00000362701 134 ntBASIC0.13□□□□□ -2.39
SHMT2P34897 Y_RNA.416-201ENST00000384014 113 ntBASIC0.13□□□□□ -2.39
SHMT2P34897 MIR644A-201ENST00000385262 94 ntBASIC0.13□□□□□ -2.39
SHMT2P34897 AL512326.2-201ENST00000426359 151 ntBASIC0.13□□□□□ -2.39
SHMT2P34897 SNORA62.5-201ENST00000516634 120 ntBASIC0.13□□□□□ -2.39
SHMT2P34897 RNU6-765P-201ENST00000516916 99 ntBASIC0.13□□□□□ -2.39
SHMT2P34897 AC011921.3-201ENST00000605540 361 ntBASIC0.13□□□□□ -2.39
SHMT2P34897 MIR8062-201ENST00000621515 85 ntBASIC0.13□□□□□ -2.39
SHMT2P34897 AC021613.1-201ENST00000623880 111 ntBASIC0.13□□□□□ -2.39
SHMT2P34897 MIR330-201ENST00000362196 94 ntBASIC0.12□□□□□ -2.39
SHMT2P34897 RNU6-403P-201ENST00000363163 104 ntBASIC0.12□□□□□ -2.39
SHMT2P34897 RNU6-815P-201ENST00000384080 113 ntBASIC0.12□□□□□ -2.39
SHMT2P34897 Y_RNA.461-201ENST00000384263 103 ntBASIC0.12□□□□□ -2.39
SHMT2P34897 RNU6-472P-201ENST00000384299 107 ntBASIC0.12□□□□□ -2.39
SHMT2P34897 SNORA20-201ENST00000384662 132 ntBASIC0.12□□□□□ -2.39
SHMT2P34897 RNA5SP299-201ENST00000391203 116 ntBASIC0.12□□□□□ -2.39
SHMT2P34897 MIR1295A-201ENST00000408463 79 ntBASIC0.12□□□□□ -2.39
SHMT2P34897 SEPT7P4-201ENST00000437076 306 ntBASIC0.12□□□□□ -2.39
SHMT2P34897 RNU6-469P-201ENST00000516253 101 ntBASIC0.12□□□□□ -2.39
SHMT2P34897 RNU6-635P-201ENST00000516651 102 ntBASIC0.12□□□□□ -2.39
SHMT2P34897 AC069113.3-201ENST00000521019 150 ntBASIC0.12□□□□□ -2.39
SHMT2P34897 MIR3152-201ENST00000579801 74 ntBASIC0.12□□□□□ -2.39
SHMT2P34897 AC044792.1-201ENST00000593294 196 ntBASIC0.12□□□□□ -2.39
SHMT2P34897 DLEU2_5.2-201ENST00000610606 84 ntBASIC0.12□□□□□ -2.39
SHMT2P34897 RNU6-103P-201ENST00000363686 107 ntBASIC0.11□□□□□ -2.39
SHMT2P34897 RNU6-978P-201ENST00000364371 103 ntBASIC0.11□□□□□ -2.39
SHMT2P34897 RNU4-67P-201ENST00000364569 141 ntBASIC0.11□□□□□ -2.39
SHMT2P34897 RNU6-1227P-201ENST00000383981 107 ntBASIC0.11□□□□□ -2.39
SHMT2P34897 RNU6-949P-201ENST00000384040 107 ntBASIC0.11□□□□□ -2.39
SHMT2P34897 AC073261.1-201ENST00000429409 121 ntBASIC0.11□□□□□ -2.39
SHMT2P34897 MTATP8P1-201ENST00000467115 207 ntBASIC0.11□□□□□ -2.39
SHMT2P34897 SNORA31.14-201ENST00000516728 116 ntBASIC0.11□□□□□ -2.39
SHMT2P34897 RNA5SP268-201ENST00000516828 124 ntBASIC0.11□□□□□ -2.39
SHMT2P34897 SCARNA15-202ENST00000516881 127 ntBASIC0.11□□□□□ -2.39
SHMT2P34897 IGHVIII-67-2-201ENST00000519849 88 ntBASIC0.11□□□□□ -2.39
SHMT2P34897 MIR4643-201ENST00000577473 78 ntBASIC0.11□□□□□ -2.39
SHMT2P34897 MIR4491-201ENST00000581087 68 ntBASIC0.11□□□□□ -2.39
SHMT2P34897 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC0.1□□□□□ -2.39
SHMT2P34897 Y_RNA.262-201ENST00000364641 102 ntBASIC0.1□□□□□ -2.39
SHMT2P34897 Y_RNA.604-201ENST00000410574 102 ntBASIC0.1□□□□□ -2.39
SHMT2P34897 RNU6-1153P-201ENST00000516760 105 ntBASIC0.1□□□□□ -2.39
SHMT2P34897 AC112693.2-201ENST00000556538 232 ntBASIC0.1□□□□□ -2.39
SHMT2P34897 MIR7107-201ENST00000611489 80 ntBASIC0.1□□□□□ -2.39
SHMT2P34897 Y_RNA.174-201ENST00000363781 105 ntBASIC0.09□□□□□ -2.4
SHMT2P34897 SNORA18-201ENST00000384416 132 ntBASIC0.09□□□□□ -2.4
SHMT2P34897 RNU6-291P-201ENST00000384720 107 ntBASIC0.09□□□□□ -2.4
SHMT2P34897 MIR1302-6-201ENST00000408466 90 ntBASIC0.09□□□□□ -2.4
SHMT2P34897 MIR548F4-201ENST00000408515 105 ntBASIC0.09□□□□□ -2.4
SHMT2P34897 RNU2-59P-201ENST00000410482 191 ntBASIC0.09□□□□□ -2.4
SHMT2P34897 MIR6828-201ENST00000636181 60 ntBASIC0.09□□□□□ -2.4
SHMT2P34897 MIR4315-1-201ENST00000636800 73 ntBASIC0.09□□□□□ -2.4
SHMT2P34897 MIR4315-2-201ENST00000640925 73 ntBASIC0.09□□□□□ -2.4
SHMT2P34897 Y_RNA.76-201ENST00000362931 109 ntBASIC0.08□□□□□ -2.4
SHMT2P34897 RNU4-16P-201ENST00000364737 141 ntBASIC0.08□□□□□ -2.4
SHMT2P34897 Y_RNA.352-201ENST00000365439 102 ntBASIC0.08□□□□□ -2.4
SHMT2P34897 SNORA72.6-201ENST00000384520 129 ntBASIC0.08□□□□□ -2.4
SHMT2P34897 RNA5SP127-201ENST00000411051 133 ntBASIC0.08□□□□□ -2.4
SHMT2P34897 AL121914.1-201ENST00000450188 156 ntBASIC0.08□□□□□ -2.4
SHMT2P34897 SNORD116-25-201ENST00000516517 92 ntBASIC0.08□□□□□ -2.4
SHMT2P34897 RNU7-70P-201ENST00000516941 66 ntBASIC0.08□□□□□ -2.4
SHMT2P34897 SCARNA16.5-201ENST00000517114 183 ntBASIC0.08□□□□□ -2.4
SHMT2P34897 MIR4744-201ENST00000581563 82 ntBASIC0.08□□□□□ -2.4
SHMT2P34897 U6.104-201ENST00000637979 90 ntBASIC0.08□□□□□ -2.4
SHMT2P34897 RNU6-238P-201ENST00000363313 106 ntBASIC0.07□□□□□ -2.4
SHMT2P34897 SNORA42.1-201ENST00000363515 137 ntBASIC0.07□□□□□ -2.4
SHMT2P34897 RNY1P13-201ENST00000365030 105 ntBASIC0.07□□□□□ -2.4
SHMT2P34897 Y_RNA.476-201ENST00000384347 108 ntBASIC0.07□□□□□ -2.4
SHMT2P34897 Y_RNA.536-201ENST00000384621 113 ntBASIC0.07□□□□□ -2.4
SHMT2P34897 Y_RNA.539-201ENST00000384635 107 ntBASIC0.07□□□□□ -2.4
SHMT2P34897 Y_RNA.574-201ENST00000384766 95 ntBASIC0.07□□□□□ -2.4
SHMT2P34897 MIR624-201ENST00000385217 97 ntBASIC0.07□□□□□ -2.4
SHMT2P34897 SUMO1P3-201ENST00000439961 304 ntBASIC0.07□□□□□ -2.4
SHMT2P34897 RNU6-135P-201ENST00000516769 101 ntBASIC0.07□□□□□ -2.4
SHMT2P34897 RNU6-1149P-201ENST00000516810 97 ntBASIC0.07□□□□□ -2.4
SHMT2P34897 Y_RNA.720-201ENST00000517166 92 ntBASIC0.07□□□□□ -2.4
SHMT2P34897 MTND5P34-201ENST00000568888 325 ntBASIC0.07□□□□□ -2.4
SHMT2P34897 MIR378D2-201ENST00000580636 98 ntBASIC0.07□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 191 ms