Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RNU6-917P-201ENST00000516294 104 ntBASIC0.96□□□□□ -2.26
HOXC4P09017 RNU7-40P-201ENST00000516397 64 ntBASIC0.96□□□□□ -2.26
HOXC4P09017 RN7SKP88-201ENST00000516847 250 ntBASIC0.96□□□□□ -2.26
HOXC4P09017 Y_RNA.714-201ENST00000517065 90 ntBASIC0.96□□□□□ -2.26
HOXC4P09017 MIR378D2-201ENST00000580636 98 ntBASIC0.96□□□□□ -2.26
HOXC4P09017 AC087685.1-201ENST00000587507 141 ntBASIC0.96□□□□□ -2.26
HOXC4P09017 AC097639.2-201ENST00000603159 172 ntBASIC0.96□□□□□ -2.26
HOXC4P09017 AC103810.9-201ENST00000606688 112 ntBASIC0.96□□□□□ -2.26
HOXC4P09017 7SK.8-201ENST00000612110 250 ntBASIC0.96□□□□□ -2.26
HOXC4P09017 7SK.11-201ENST00000615477 250 ntBASIC0.96□□□□□ -2.26
HOXC4P09017 7SK.13-201ENST00000622040 250 ntBASIC0.96□□□□□ -2.26
HOXC4P09017 MIR376A2-201ENST00000636782 80 ntBASIC0.96□□□□□ -2.26
HOXC4P09017 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.95□□□□□ -2.26
HOXC4P09017 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.95□□□□□ -2.26
HOXC4P09017 RNU6-1082P-201ENST00000364574 107 ntBASIC0.95□□□□□ -2.26
HOXC4P09017 Y_RNA.336-201ENST00000365307 109 ntBASIC0.95□□□□□ -2.26
HOXC4P09017 Y_RNA.357-201ENST00000365487 109 ntBASIC0.95□□□□□ -2.26
HOXC4P09017 RNA5SP259-201ENST00000365541 109 ntBASIC0.95□□□□□ -2.26
HOXC4P09017 Y_RNA.494-201ENST00000384432 111 ntBASIC0.95□□□□□ -2.26
HOXC4P09017 Y_RNA.547-201ENST00000384654 119 ntBASIC0.95□□□□□ -2.26
HOXC4P09017 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
HOXC4P09017 RNU6-239P-201ENST00000390990 99 ntBASIC0.95□□□□□ -2.26
HOXC4P09017 MIR548O-201ENST00000408583 114 ntBASIC0.95□□□□□ -2.26
HOXC4P09017 AF228730.3-201ENST00000436691 102 ntBASIC0.95□□□□□ -2.26
HOXC4P09017 AC092991.1-201ENST00000477176 376 ntBASIC0.95□□□□□ -2.26
HOXC4P09017 RNU6-693P-201ENST00000516134 107 ntBASIC0.95□□□□□ -2.26
HOXC4P09017 RNU6-346P-201ENST00000516288 111 ntBASIC0.95□□□□□ -2.26
HOXC4P09017 RNA5SP153-201ENST00000516498 76 ntBASIC0.95□□□□□ -2.26
HOXC4P09017 RNU7-121P-201ENST00000516604 62 ntBASIC0.95□□□□□ -2.26
HOXC4P09017 RNU6-365P-201ENST00000517113 106 ntBASIC0.95□□□□□ -2.26
HOXC4P09017 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC0.95□□□□□ -2.26
HOXC4P09017 RNU6-888P-201ENST00000363010 101 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 RNU6-1062P-201ENST00000383908 107 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 SNORD116-18-201ENST00000383961 92 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 Y_RNA.464-201ENST00000384282 110 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 MIR518E-201ENST00000385252 88 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 MIR802-201ENST00000390235 94 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 RNU6-588P-201ENST00000410281 105 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 RNU6-938P-201ENST00000411285 103 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 AL133373.1-201ENST00000497098 94 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 AC107027.2-201ENST00000512197 115 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 RNU4-57P-201ENST00000515980 135 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 RNA5SP272-201ENST00000516095 111 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 RNU6-1212P-201ENST00000517023 104 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 MIR3664-201ENST00000579074 99 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 MIR4662B-201ENST00000579498 81 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 MIR3129-201ENST00000581095 76 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 FAM106DP-201ENST00000586416 501 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 HSPE1P19-201ENST00000603327 295 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 AC015726.2-201ENST00000620112 122 ntBASIC0.94□□□□□ -2.26
HOXC4P09017 MIR373-201ENST00000362273 69 ntBASIC0.93□□□□□ -2.26
HOXC4P09017 RNU6-199P-201ENST00000362954 107 ntBASIC0.93□□□□□ -2.26
HOXC4P09017 RNU6-151P-201ENST00000364158 107 ntBASIC0.93□□□□□ -2.26
HOXC4P09017 Y_RNA.224-201ENST00000364308 111 ntBASIC0.93□□□□□ -2.26
HOXC4P09017 RNU6-1187P-201ENST00000364771 110 ntBASIC0.93□□□□□ -2.26
HOXC4P09017 Y_RNA.506-201ENST00000384494 102 ntBASIC0.93□□□□□ -2.26
HOXC4P09017 Y_RNA.521-201ENST00000384560 114 ntBASIC0.93□□□□□ -2.26
HOXC4P09017 MIR520E-201ENST00000384867 87 ntBASIC0.93□□□□□ -2.26
HOXC4P09017 SNORD77.3-201ENST00000391113 65 ntBASIC0.93□□□□□ -2.26
HOXC4P09017 SNORA79-201ENST00000408376 140 ntBASIC0.93□□□□□ -2.26
HOXC4P09017 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC0.93□□□□□ -2.26
HOXC4P09017 HMGN2P32-201ENST00000444648 269 ntBASIC0.93□□□□□ -2.26
HOXC4P09017 SNORD116-25-201ENST00000516517 92 ntBASIC0.93□□□□□ -2.26
HOXC4P09017 RNU6-504P-201ENST00000516568 104 ntBASIC0.93□□□□□ -2.26
HOXC4P09017 SNORD36C-201ENST00000516733 66 ntBASIC0.93□□□□□ -2.26
HOXC4P09017 RNU7-181P-201ENST00000517234 74 ntBASIC0.93□□□□□ -2.26
HOXC4P09017 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC0.93□□□□□ -2.26
HOXC4P09017 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC0.93□□□□□ -2.26
HOXC4P09017 RNU4-11P-201ENST00000365287 132 ntBASIC0.92□□□□□ -2.26
HOXC4P09017 Y_RNA.337-201ENST00000365312 102 ntBASIC0.92□□□□□ -2.26
HOXC4P09017 SNORD24-201ENST00000383884 75 ntBASIC0.92□□□□□ -2.26
HOXC4P09017 RNU6-125P-201ENST00000384505 107 ntBASIC0.92□□□□□ -2.26
HOXC4P09017 MIR570-201ENST00000384917 97 ntBASIC0.92□□□□□ -2.26
HOXC4P09017 SNORD41-201ENST00000386967 70 ntBASIC0.92□□□□□ -2.26
HOXC4P09017 SNORD28B-201ENST00000390993 75 ntBASIC0.92□□□□□ -2.26
HOXC4P09017 Y_RNA.580-201ENST00000391004 95 ntBASIC0.92□□□□□ -2.26
HOXC4P09017 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC0.92□□□□□ -2.26
HOXC4P09017 SUMO1P3-201ENST00000439961 304 ntBASIC0.92□□□□□ -2.26
HOXC4P09017 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.92□□□□□ -2.26
HOXC4P09017 RNU7-200P-201ENST00000516105 62 ntBASIC0.92□□□□□ -2.26
HOXC4P09017 RNU6-922P-201ENST00000516753 99 ntBASIC0.92□□□□□ -2.26
HOXC4P09017 SNORA18.7-201ENST00000516910 131 ntBASIC0.92□□□□□ -2.26
HOXC4P09017 RNA5SP404-201ENST00000517118 132 ntBASIC0.92□□□□□ -2.26
HOXC4P09017 MIR548AR-201ENST00000582191 57 ntBASIC0.92□□□□□ -2.26
HOXC4P09017 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.92□□□□□ -2.26
HOXC4P09017 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
HOXC4P09017 MTND5P32-201ENST00000560711 1802 ntBASIC0.92□□□□□ -2.26
HOXC4P09017 Y_RNA.37-201ENST00000362606 108 ntBASIC0.91□□□□□ -2.26
HOXC4P09017 RNU6-508P-201ENST00000363231 103 ntBASIC0.91□□□□□ -2.26
HOXC4P09017 SNORD115-28-201ENST00000363931 81 ntBASIC0.91□□□□□ -2.26
HOXC4P09017 RNU6-449P-201ENST00000383914 107 ntBASIC0.91□□□□□ -2.26
HOXC4P09017 Y_RNA.393-201ENST00000383936 102 ntBASIC0.91□□□□□ -2.26
HOXC4P09017 RNU6-187P-201ENST00000384139 106 ntBASIC0.91□□□□□ -2.26
HOXC4P09017 MIR452-201ENST00000385020 85 ntBASIC0.91□□□□□ -2.26
HOXC4P09017 MIR136-201ENST00000385207 82 ntBASIC0.91□□□□□ -2.26
HOXC4P09017 MIR653-201ENST00000385279 96 ntBASIC0.91□□□□□ -2.26
HOXC4P09017 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
HOXC4P09017 SNORA26-201ENST00000391286 122 ntBASIC0.91□□□□□ -2.26
HOXC4P09017 SNORD123-201ENST00000459473 70 ntBASIC0.91□□□□□ -2.26
HOXC4P09017 MIR3133-201ENST00000583157 78 ntBASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 197.7 ms