Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SNRPGP19-201ENST00000603826 189 ntBASIC2.43□□□□□ -2.02
TRAIPQ9BWF2 AC243994.1-201ENST00000618627 109 ntBASIC2.43□□□□□ -2.02
TRAIPQ9BWF2 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
TRAIPQ9BWF2 RNU4-52P-201ENST00000384209 138 ntBASIC2.42□□□□□ -2.02
TRAIPQ9BWF2 SNORA48.3-201ENST00000391081 134 ntBASIC2.42□□□□□ -2.02
TRAIPQ9BWF2 RNU6-346P-201ENST00000516288 111 ntBASIC2.42□□□□□ -2.02
TRAIPQ9BWF2 RNU6-1149P-201ENST00000516810 97 ntBASIC2.42□□□□□ -2.02
TRAIPQ9BWF2 MIR6873-201ENST00000622788 63 ntBASIC2.42□□□□□ -2.02
TRAIPQ9BWF2 AC008133.2-201ENST00000624540 351 ntBASIC2.42□□□□□ -2.02
TRAIPQ9BWF2 ZNF355P-201ENST00000427301 3216 ntBASIC2.42□□□□□ -2.02
TRAIPQ9BWF2 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC2.42□□□□□ -2.02
TRAIPQ9BWF2 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
TRAIPQ9BWF2 MTND5P32-201ENST00000560711 1802 ntBASIC2.41□□□□□ -2.02
TRAIPQ9BWF2 MIRLET7G-201ENST00000362280 84 ntBASIC2.41□□□□□ -2.02
TRAIPQ9BWF2 Y_RNA.52-201ENST00000362760 96 ntBASIC2.41□□□□□ -2.02
TRAIPQ9BWF2 SNORD41-201ENST00000386967 70 ntBASIC2.41□□□□□ -2.02
TRAIPQ9BWF2 SNORD28B-201ENST00000390993 75 ntBASIC2.41□□□□□ -2.02
TRAIPQ9BWF2 RPS29P29-201ENST00000456396 171 ntBASIC2.41□□□□□ -2.02
TRAIPQ9BWF2 RNU6-250P-201ENST00000516958 103 ntBASIC2.41□□□□□ -2.02
TRAIPQ9BWF2 MIR4791-201ENST00000607666 84 ntBASIC2.41□□□□□ -2.02
TRAIPQ9BWF2 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
TRAIPQ9BWF2 RNU1-133P-201ENST00000364867 167 ntBASIC2.4□□□□□ -2.03
TRAIPQ9BWF2 RNU6-125P-201ENST00000384505 107 ntBASIC2.4□□□□□ -2.03
TRAIPQ9BWF2 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC2.4□□□□□ -2.03
TRAIPQ9BWF2 AL035398.1-201ENST00000430869 322 ntBASIC2.4□□□□□ -2.03
TRAIPQ9BWF2 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
TRAIPQ9BWF2 MIR7843-201ENST00000622274 79 ntBASIC2.4□□□□□ -2.03
TRAIPQ9BWF2 ZNF720P1-201ENST00000562403 1939 ntBASIC2.4□□□□□ -2.03
TRAIPQ9BWF2 RNA5SP432-201ENST00000362480 116 ntBASIC2.39□□□□□ -2.03
TRAIPQ9BWF2 RNA5SP48-201ENST00000363969 126 ntBASIC2.39□□□□□ -2.03
TRAIPQ9BWF2 SNORA64-201ENST00000384674 134 ntBASIC2.39□□□□□ -2.03
TRAIPQ9BWF2 RNU2-40P-201ENST00000410833 196 ntBASIC2.39□□□□□ -2.03
TRAIPQ9BWF2 RNU6-958P-201ENST00000516995 106 ntBASIC2.39□□□□□ -2.03
TRAIPQ9BWF2 AP001328.1-201ENST00000528550 176 ntBASIC2.39□□□□□ -2.03
TRAIPQ9BWF2 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
TRAIPQ9BWF2 MIR6132-201ENST00000622083 109 ntBASIC2.39□□□□□ -2.03
TRAIPQ9BWF2 Y_RNA.120-201ENST00000363304 110 ntBASIC2.38□□□□□ -2.03
TRAIPQ9BWF2 MIR570-201ENST00000384917 97 ntBASIC2.38□□□□□ -2.03
TRAIPQ9BWF2 SUMO1P3-201ENST00000439961 304 ntBASIC2.38□□□□□ -2.03
TRAIPQ9BWF2 RNU6-902P-201ENST00000517212 91 ntBASIC2.38□□□□□ -2.03
TRAIPQ9BWF2 MIR3664-201ENST00000579074 99 ntBASIC2.38□□□□□ -2.03
TRAIPQ9BWF2 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
TRAIPQ9BWF2 AL596211.1-201ENST00000569873 2277 ntBASIC2.38□□□□□ -2.03
TRAIPQ9BWF2 MIR569-201ENST00000385228 96 ntBASIC2.37□□□□□ -2.03
TRAIPQ9BWF2 MIR613-201ENST00000385248 95 ntBASIC2.37□□□□□ -2.03
TRAIPQ9BWF2 AC104435.1-201ENST00000483483 166 ntBASIC2.37□□□□□ -2.03
TRAIPQ9BWF2 RNU6-237P-201ENST00000515985 71 ntBASIC2.37□□□□□ -2.03
TRAIPQ9BWF2 AL512310.8-201ENST00000550183 120 ntBASIC2.37□□□□□ -2.03
TRAIPQ9BWF2 AP001485.1-201ENST00000604799 199 ntBASIC2.37□□□□□ -2.03
TRAIPQ9BWF2 AC091895.1-201ENST00000624494 256 ntBASIC2.37□□□□□ -2.03
TRAIPQ9BWF2 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC2.37□□□□□ -2.03
TRAIPQ9BWF2 MIR4251-201ENST00000635819 61 ntBASIC2.37□□□□□ -2.03
TRAIPQ9BWF2 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC2.36□□□□□ -2.03
TRAIPQ9BWF2 snoU13.23-201ENST00000458863 104 ntBASIC2.36□□□□□ -2.03
TRAIPQ9BWF2 RNU6-998P-201ENST00000515894 101 ntBASIC2.36□□□□□ -2.03
TRAIPQ9BWF2 RNU6-426P-201ENST00000516464 97 ntBASIC2.36□□□□□ -2.03
TRAIPQ9BWF2 RN7SKP88-201ENST00000516847 250 ntBASIC2.36□□□□□ -2.03
TRAIPQ9BWF2 7SK.8-201ENST00000612110 250 ntBASIC2.36□□□□□ -2.03
TRAIPQ9BWF2 7SK.11-201ENST00000615477 250 ntBASIC2.36□□□□□ -2.03
TRAIPQ9BWF2 7SK.13-201ENST00000622040 250 ntBASIC2.36□□□□□ -2.03
TRAIPQ9BWF2 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.36□□□□□ -2.03
TRAIPQ9BWF2 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
TRAIPQ9BWF2 Y_RNA.420-201ENST00000384043 110 ntBASIC2.35□□□□□ -2.03
TRAIPQ9BWF2 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
TRAIPQ9BWF2 RNU6-460P-201ENST00000391158 108 ntBASIC2.35□□□□□ -2.03
TRAIPQ9BWF2 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
TRAIPQ9BWF2 snoU13.16-201ENST00000459350 104 ntBASIC2.35□□□□□ -2.03
TRAIPQ9BWF2 Y_RNA.690-201ENST00000516603 95 ntBASIC2.35□□□□□ -2.03
TRAIPQ9BWF2 Y_RNA.692-201ENST00000516627 105 ntBASIC2.35□□□□□ -2.03
TRAIPQ9BWF2 Y_RNA.757-201ENST00000578934 114 ntBASIC2.35□□□□□ -2.03
TRAIPQ9BWF2 MIR4285-201ENST00000581001 85 ntBASIC2.35□□□□□ -2.03
TRAIPQ9BWF2 MIR4448-201ENST00000584360 86 ntBASIC2.35□□□□□ -2.03
TRAIPQ9BWF2 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC2.35□□□□□ -2.03
TRAIPQ9BWF2 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
TRAIPQ9BWF2 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.35□□□□□ -2.03
TRAIPQ9BWF2 Y_RNA.251-201ENST00000364551 99 ntBASIC2.34□□□□□ -2.03
TRAIPQ9BWF2 RNU6-915P-201ENST00000364943 103 ntBASIC2.34□□□□□ -2.03
TRAIPQ9BWF2 MIR1289-2-201ENST00000408360 111 ntBASIC2.34□□□□□ -2.03
TRAIPQ9BWF2 RNA5SP261-201ENST00000410536 106 ntBASIC2.34□□□□□ -2.03
TRAIPQ9BWF2 RNU2-11P-201ENST00000459191 187 ntBASIC2.34□□□□□ -2.03
TRAIPQ9BWF2 RNU5E-3P-201ENST00000515913 68 ntBASIC2.34□□□□□ -2.03
TRAIPQ9BWF2 MIR376A2-201ENST00000636782 80 ntBASIC2.34□□□□□ -2.03
TRAIPQ9BWF2 AC010332.2-201ENST00000613083 1904 ntBASIC2.33□□□□□ -2.04
TRAIPQ9BWF2 Y_RNA.494-201ENST00000384432 111 ntBASIC2.33□□□□□ -2.04
TRAIPQ9BWF2 SNORA40-201ENST00000388090 126 ntBASIC2.33□□□□□ -2.04
TRAIPQ9BWF2 RNU7-197P-201ENST00000458836 62 ntBASIC2.33□□□□□ -2.04
TRAIPQ9BWF2 MIR3935-201ENST00000583472 104 ntBASIC2.33□□□□□ -2.04
TRAIPQ9BWF2 AC002984.1-201ENST00000591692 448 ntBASIC2.33□□□□□ -2.04
TRAIPQ9BWF2 TUG1_4.1-201ENST00000619464 181 ntBASIC2.33□□□□□ -2.04
TRAIPQ9BWF2 AC091932.4-201ENST00000623386 200 ntBASIC2.33□□□□□ -2.04
TRAIPQ9BWF2 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.33□□□□□ -2.04
TRAIPQ9BWF2 U8.1-201ENST00000362843 134 ntBASIC2.32□□□□□ -2.04
TRAIPQ9BWF2 Y_RNA.568-201ENST00000384742 113 ntBASIC2.32□□□□□ -2.04
TRAIPQ9BWF2 AL603914.1-201ENST00000401964 204 ntBASIC2.32□□□□□ -2.04
TRAIPQ9BWF2 RPS27P16-201ENST00000425758 201 ntBASIC2.32□□□□□ -2.04
TRAIPQ9BWF2 RNU2-13P-201ENST00000515909 113 ntBASIC2.32□□□□□ -2.04
TRAIPQ9BWF2 RNU7-41P-201ENST00000515917 61 ntBASIC2.32□□□□□ -2.04
TRAIPQ9BWF2 SCARNA15-202ENST00000516881 127 ntBASIC2.32□□□□□ -2.04
TRAIPQ9BWF2 AC024614.2-201ENST00000577584 372 ntBASIC2.32□□□□□ -2.04
TRAIPQ9BWF2 MIR3152-201ENST00000579801 74 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 251.1 ms