Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNU6-711P-201ENST00000517255 106 ntBASIC3.75□□□□□ -1.81
COL9A1P20849 RNU6-1116P-201ENST00000517269 99 ntBASIC3.75□□□□□ -1.81
COL9A1P20849 uc_338.32-201ENST00000615087 172 ntBASIC3.75□□□□□ -1.81
COL9A1P20849 FAS-AS1.1-201ENST00000615327 126 ntBASIC3.75□□□□□ -1.81
COL9A1P20849 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.75□□□□□ -1.81
COL9A1P20849 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL9A1P20849 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
COL9A1P20849 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
COL9A1P20849 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL9A1P20849 Y_RNA.370-201ENST00000365589 108 ntBASIC3.74□□□□□ -1.81
COL9A1P20849 SNORA26.7-201ENST00000391288 122 ntBASIC3.74□□□□□ -1.81
COL9A1P20849 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC3.74□□□□□ -1.81
COL9A1P20849 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC3.74□□□□□ -1.81
COL9A1P20849 RNU6-958P-201ENST00000516995 106 ntBASIC3.74□□□□□ -1.81
COL9A1P20849 AC008011.1-201ENST00000545989 227 ntBASIC3.74□□□□□ -1.81
COL9A1P20849 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC3.74□□□□□ -1.81
COL9A1P20849 SEPT14P17-201ENST00000617978 177 ntBASIC3.74□□□□□ -1.81
COL9A1P20849 MIR8054-201ENST00000620877 86 ntBASIC3.74□□□□□ -1.81
COL9A1P20849 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.74□□□□□ -1.81
COL9A1P20849 DGKI-204ENST00000453654 12928 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL9A1P20849 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
COL9A1P20849 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.74□□□□□ -1.81
COL9A1P20849 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.74□□□□□ -1.81
COL9A1P20849 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.73□□□□□ -1.81
COL9A1P20849 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL9A1P20849 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
COL9A1P20849 RNU6-833P-201ENST00000363486 107 ntBASIC3.73□□□□□ -1.81
COL9A1P20849 TRAJ61-201ENST00000390479 60 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
COL9A1P20849 MIR548G-201ENST00000408442 89 ntBASIC3.73□□□□□ -1.81
COL9A1P20849 RNA5SP146-201ENST00000410743 123 ntBASIC3.73□□□□□ -1.81
COL9A1P20849 AC023141.11-201ENST00000508864 202 ntBASIC3.73□□□□□ -1.81
COL9A1P20849 RNU1-41P-201ENST00000516161 162 ntBASIC3.73□□□□□ -1.81
COL9A1P20849 RNU1-48P-201ENST00000516400 162 ntBASIC3.73□□□□□ -1.81
COL9A1P20849 SNORA70.18-201ENST00000516696 98 ntBASIC3.73□□□□□ -1.81
COL9A1P20849 RNU6-90P-201ENST00000606352 106 ntBASIC3.73□□□□□ -1.81
COL9A1P20849 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
COL9A1P20849 SNORA24-201ENST00000384096 131 ntBASIC3.72□□□□□ -1.81
COL9A1P20849 MIR206-201ENST00000384872 86 ntBASIC3.72□□□□□ -1.81
COL9A1P20849 SNORA11.4-201ENST00000408823 129 ntBASIC3.72□□□□□ -1.81
COL9A1P20849 RNU7-73P-201ENST00000458743 63 ntBASIC3.72□□□□□ -1.81
COL9A1P20849 AC018868.1-201ENST00000491307 315 ntBASIC3.72□□□□□ -1.81
COL9A1P20849 HMSD-204ENST00000526932 162 ntTSL 3 BASIC3.72□□□□□ -1.81
COL9A1P20849 PLD1-217ENST00000627725 174 ntTSL 5 BASIC3.72□□□□□ -1.81
COL9A1P20849 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
COL9A1P20849 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
COL9A1P20849 CNOT1-201ENST00000317147 8471 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.81
COL9A1P20849 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.71□□□□□ -1.82
COL9A1P20849 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL9A1P20849 SNORA68.1-201ENST00000364537 132 ntBASIC3.71□□□□□ -1.82
COL9A1P20849 RNA5SP424-201ENST00000390988 115 ntBASIC3.71□□□□□ -1.82
COL9A1P20849 RNA5SP109-201ENST00000391010 116 ntBASIC3.71□□□□□ -1.82
COL9A1P20849 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC3.71□□□□□ -1.82
COL9A1P20849 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
COL9A1P20849 PRLR-217ENST00000618457 11688 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL9A1P20849 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.7□□□□□ -1.82
COL9A1P20849 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL9A1P20849 snoU13.23-201ENST00000458863 104 ntBASIC3.7□□□□□ -1.82
COL9A1P20849 RNU6-548P-201ENST00000517083 115 ntBASIC3.7□□□□□ -1.82
COL9A1P20849 AL020996.3-201ENST00000606617 222 ntBASIC3.7□□□□□ -1.82
COL9A1P20849 U4atac.1-201ENST00000618345 95 ntBASIC3.7□□□□□ -1.82
COL9A1P20849 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL9A1P20849 AC005336.3-201ENST00000623833 2679 ntBASIC3.7□□□□□ -1.82
COL9A1P20849 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL9A1P20849 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC3.69□□□□□ -1.82
COL9A1P20849 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.69□□□□□ -1.82
COL9A1P20849 RNU6-1094P-201ENST00000362416 104 ntBASIC3.69□□□□□ -1.82
COL9A1P20849 RNU6-1072P-201ENST00000384703 107 ntBASIC3.69□□□□□ -1.82
COL9A1P20849 RNU6-443P-201ENST00000384780 107 ntBASIC3.69□□□□□ -1.82
COL9A1P20849 MIR34C-201ENST00000384831 77 ntBASIC3.69□□□□□ -1.82
COL9A1P20849 RNU6-129P-201ENST00000391022 107 ntBASIC3.69□□□□□ -1.82
COL9A1P20849 RNU6-613P-201ENST00000410412 108 ntBASIC3.69□□□□□ -1.82
COL9A1P20849 MIR4791-201ENST00000607666 84 ntBASIC3.69□□□□□ -1.82
COL9A1P20849 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC3.69□□□□□ -1.82
COL9A1P20849 AP000553.6-201ENST00000641242 118 ntBASIC3.69□□□□□ -1.82
COL9A1P20849 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
COL9A1P20849 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL9A1P20849 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
COL9A1P20849 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
COL9A1P20849 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.69□□□□□ -1.82
COL9A1P20849 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL9A1P20849 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
COL9A1P20849 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL9A1P20849 KLHL13-208ENST00000541812 3102 ntTSL 2 BASIC3.68□□□□□ -1.82
COL9A1P20849 RNU6-865P-201ENST00000364772 107 ntBASIC3.68□□□□□ -1.82
COL9A1P20849 SNORD38.2-201ENST00000384470 69 ntBASIC3.68□□□□□ -1.82
COL9A1P20849 MIR513A2-201ENST00000385249 127 ntBASIC3.68□□□□□ -1.82
COL9A1P20849 RNU6-826P-201ENST00000516827 104 ntBASIC3.68□□□□□ -1.82
COL9A1P20849 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
COL9A1P20849 IPO8P1-201ENST00000455509 3109 ntBASIC3.68□□□□□ -1.82
COL9A1P20849 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC3.67□□□□□ -1.82
COL9A1P20849 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.67□□□□□ -1.82
COL9A1P20849 AC245060.5-201ENST00000610778 3293 ntBASIC3.67□□□□□ -1.82
COL9A1P20849 SNORA25B-201ENST00000365507 128 ntBASIC3.67□□□□□ -1.82
COL9A1P20849 RNU6-480P-201ENST00000384332 107 ntBASIC3.67□□□□□ -1.82
COL9A1P20849 RNU6-482P-201ENST00000391068 107 ntBASIC3.67□□□□□ -1.82
COL9A1P20849 RNU1-98P-201ENST00000458992 160 ntBASIC3.67□□□□□ -1.82
COL9A1P20849 TRBV12-2-201ENST00000489763 344 ntBASIC3.67□□□□□ -1.82
COL9A1P20849 AC090255.1-201ENST00000495779 349 ntBASIC3.67□□□□□ -1.82
COL9A1P20849 RNU7-35P-201ENST00000517174 62 ntBASIC3.67□□□□□ -1.82
COL9A1P20849 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 184.7 ms