Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 AC022709.1-201ENST00000615967 87 ntBASIC1.21□□□□□ -2.22
LIME1Q9H400 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.21□□□□□ -2.22
LIME1Q9H400 AP000648.3-201ENST00000623539 4507 ntBASIC1.21□□□□□ -2.22
LIME1Q9H400 RNU4-90P-201ENST00000362773 141 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 Y_RNA.341-201ENST00000365341 102 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 RNU6-639P-201ENST00000384074 107 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 MIR520E-201ENST00000384867 87 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 RNU6-985P-201ENST00000410182 104 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 RN7SKP51-201ENST00000410781 304 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 AC104332.1-201ENST00000440471 797 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 LINC01399-202ENST00000458450 244 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 RPS29P1-201ENST00000465274 159 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 RPL39P38-201ENST00000467018 153 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 AC092991.1-201ENST00000477176 376 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 RNU6-764P-201ENST00000516396 105 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 AP003357.1-201ENST00000604497 148 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 AP001485.1-201ENST00000604799 199 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 MIR7974-201ENST00000615835 79 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 SNORD3E-202ENST00000627253 216 ntBASIC1.2□□□□□ -2.22
LIME1Q9H400 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.19□□□□□ -2.22
LIME1Q9H400 RNU4-80P-201ENST00000363200 141 ntBASIC1.19□□□□□ -2.22
LIME1Q9H400 Y_RNA.253-201ENST00000364562 112 ntBASIC1.19□□□□□ -2.22
LIME1Q9H400 RNU6-1080P-201ENST00000383982 107 ntBASIC1.19□□□□□ -2.22
LIME1Q9H400 MIR653-201ENST00000385279 96 ntBASIC1.19□□□□□ -2.22
LIME1Q9H400 RPS29P29-201ENST00000456396 171 ntBASIC1.19□□□□□ -2.22
LIME1Q9H400 COX6CP14-201ENST00000469580 174 ntBASIC1.19□□□□□ -2.22
LIME1Q9H400 RNU7-116P-201ENST00000516940 62 ntBASIC1.19□□□□□ -2.22
LIME1Q9H400 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.19□□□□□ -2.22
LIME1Q9H400 AC019176.1-201ENST00000518519 225 ntBASIC1.19□□□□□ -2.22
LIME1Q9H400 AC127455.1-201ENST00000565496 145 ntBASIC1.19□□□□□ -2.22
LIME1Q9H400 AL591926.4-201ENST00000616895 298 ntBASIC1.19□□□□□ -2.22
LIME1Q9H400 MIR6779-201ENST00000617283 64 ntBASIC1.19□□□□□ -2.22
LIME1Q9H400 AC027279.3-201ENST00000625055 122 ntBASIC1.19□□□□□ -2.22
LIME1Q9H400 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.19□□□□□ -2.22
LIME1Q9H400 snoU2_19.2-201ENST00000363024 80 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 RNU6-770P-201ENST00000363929 105 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 Y_RNA.210-201ENST00000364161 110 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 RNU1-93P-201ENST00000364704 169 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 Y_RNA.326-201ENST00000365176 113 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 RNU6-290P-201ENST00000365212 101 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 RNA5SP259-201ENST00000365541 109 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 RNU6-1065P-201ENST00000384513 106 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 AC233266.1-201ENST00000454518 96 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 U8.19-201ENST00000459095 133 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 RNU6-191P-201ENST00000516295 94 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 RNU7-115P-201ENST00000516433 55 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 SNORA40.15-201ENST00000516884 107 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 SUMO2P16-201ENST00000519475 264 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 AC136628.3-201ENST00000521868 290 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 AP003072.1-201ENST00000531740 145 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 AC068338.1-201ENST00000565567 176 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 AC242852.1-201ENST00000612151 96 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 AL078604.3-201ENST00000615580 211 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 AC244015.1-201ENST00000622301 99 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 AL442644.1-201ENST00000454390 3105 ntBASIC1.18□□□□□ -2.22
LIME1Q9H400 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.17□□□□□ -2.22
LIME1Q9H400 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.17□□□□□ -2.22
LIME1Q9H400 U8.1-201ENST00000362843 134 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 RNU6-199P-201ENST00000362954 107 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 RNU6-833P-201ENST00000363486 107 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 RNU6-969P-201ENST00000383900 105 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 SNORA72.4-201ENST00000384174 132 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 RNU6-1105P-201ENST00000384774 107 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 RNU6-1248P-201ENST00000391096 64 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 Y_RNA.602-201ENST00000410535 92 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 RPL21P38-201ENST00000418090 167 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 SNX2P2-201ENST00000424553 323 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 MTCO1P5-201ENST00000433573 344 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 CYCTP-201ENST00000504253 315 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 MRPS35P2-201ENST00000508242 191 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 RNU6-1143P-201ENST00000516125 104 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.17□□□□□ -2.22
LIME1Q9H400 AL512310.8-201ENST00000550183 120 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 MIR3937-201ENST00000580135 106 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 AC120024.3-201ENST00000603167 156 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.17□□□□□ -2.22
LIME1Q9H400 MIR548AY-201ENST00000617669 107 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 AL121890.5-201ENST00000620848 304 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 PVT1_3.1-201ENST00000620853 95 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 AC068647.2-201ENST00000637380 353 ntBASIC1.17□□□□□ -2.22
LIME1Q9H400 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.17□□□□□ -2.22
LIME1Q9H400 AL161722.3-201ENST00000605789 2983 ntBASIC1.16□□□□□ -2.22
LIME1Q9H400 Y_RNA.19-201ENST00000362462 99 ntBASIC1.16□□□□□ -2.22
LIME1Q9H400 Y_RNA.26-201ENST00000362539 101 ntBASIC1.16□□□□□ -2.22
LIME1Q9H400 RNU6-801P-201ENST00000364087 105 ntBASIC1.16□□□□□ -2.22
LIME1Q9H400 RNU6-806P-201ENST00000365147 105 ntBASIC1.16□□□□□ -2.22
LIME1Q9H400 Y_RNA.354-201ENST00000365448 111 ntBASIC1.16□□□□□ -2.22
LIME1Q9H400 Y_RNA.541-201ENST00000384640 113 ntBASIC1.16□□□□□ -2.22
LIME1Q9H400 MIR522-201ENST00000385071 87 ntBASIC1.16□□□□□ -2.22
LIME1Q9H400 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.16□□□□□ -2.22
LIME1Q9H400 AL731563.1-201ENST00000442202 214 ntBASIC1.16□□□□□ -2.22
LIME1Q9H400 RPL30P7-201ENST00000479312 323 ntBASIC1.16□□□□□ -2.22
LIME1Q9H400 RNU6-917P-201ENST00000516294 104 ntBASIC1.16□□□□□ -2.22
LIME1Q9H400 AC024405.2-202ENST00000532731 184 ntBASIC1.16□□□□□ -2.22
LIME1Q9H400 MIR4778-201ENST00000577635 80 ntBASIC1.16□□□□□ -2.22
LIME1Q9H400 AC022140.2-201ENST00000623500 188 ntBASIC1.16□□□□□ -2.22
LIME1Q9H400 SNORD114-26-201ENST00000363543 72 ntBASIC1.15□□□□□ -2.23
LIME1Q9H400 Y_RNA.152-201ENST00000363578 100 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 168.6 ms