Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 SNORA11.2-201ENST00000408318 127 ntBASIC4.69□□□□□ -1.66
CCDC61Q9Y6R9 MIR1265-201ENST00000408444 86 ntBASIC4.69□□□□□ -1.66
CCDC61Q9Y6R9 RNU4-37P-201ENST00000410214 84 ntBASIC4.69□□□□□ -1.66
CCDC61Q9Y6R9 AC006989.1-201ENST00000427212 131 ntBASIC4.69□□□□□ -1.66
CCDC61Q9Y6R9 AL357552.1-201ENST00000445254 415 ntBASIC4.69□□□□□ -1.66
CCDC61Q9Y6R9 S100A11P2-201ENST00000467589 312 ntBASIC4.69□□□□□ -1.66
CCDC61Q9Y6R9 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC4.69□□□□□ -1.66
CCDC61Q9Y6R9 SNORA31.21-201ENST00000517180 77 ntBASIC4.69□□□□□ -1.66
CCDC61Q9Y6R9 AC026333.2-201ENST00000542164 106 ntBASIC4.69□□□□□ -1.66
CCDC61Q9Y6R9 MIR338-201ENST00000636369 67 ntBASIC4.69□□□□□ -1.66
CCDC61Q9Y6R9 MAPK10-373ENST00000641983 6772 ntBASIC4.69□□□□□ -1.66
CCDC61Q9Y6R9 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.69□□□□□ -1.66
CCDC61Q9Y6R9 LINC01355-201ENST00000566551 5444 ntBASIC4.69□□□□□ -1.66
CCDC61Q9Y6R9 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC4.69□□□□□ -1.66
CCDC61Q9Y6R9 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC61Q9Y6R9 RNU6-478P-201ENST00000363904 110 ntBASIC4.68□□□□□ -1.66
CCDC61Q9Y6R9 SNORA32-201ENST00000384072 121 ntBASIC4.68□□□□□ -1.66
CCDC61Q9Y6R9 SNORA8-201ENST00000384574 139 ntBASIC4.68□□□□□ -1.66
CCDC61Q9Y6R9 RNA5SP482-201ENST00000391269 118 ntBASIC4.68□□□□□ -1.66
CCDC61Q9Y6R9 RNU6-613P-201ENST00000410412 108 ntBASIC4.68□□□□□ -1.66
CCDC61Q9Y6R9 RNA5SP261-201ENST00000410536 106 ntBASIC4.68□□□□□ -1.66
CCDC61Q9Y6R9 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC61Q9Y6R9 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC4.68□□□□□ -1.66
CCDC61Q9Y6R9 AC009969.1-201ENST00000438726 172 ntBASIC4.68□□□□□ -1.66
CCDC61Q9Y6R9 AC114811.1-201ENST00000507207 168 ntBASIC4.68□□□□□ -1.66
CCDC61Q9Y6R9 RNU6-1041P-201ENST00000516254 102 ntBASIC4.68□□□□□ -1.66
CCDC61Q9Y6R9 IGLV3-17-201ENST00000519099 244 ntBASIC4.68□□□□□ -1.66
CCDC61Q9Y6R9 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC4.68□□□□□ -1.66
CCDC61Q9Y6R9 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
CCDC61Q9Y6R9 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC4.67□□□□□ -1.66
CCDC61Q9Y6R9 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC4.67□□□□□ -1.66
CCDC61Q9Y6R9 SNORA25.6-201ENST00000364121 118 ntBASIC4.67□□□□□ -1.66
CCDC61Q9Y6R9 MIR767-201ENST00000390228 109 ntBASIC4.67□□□□□ -1.66
CCDC61Q9Y6R9 RNU7-34P-201ENST00000459394 64 ntBASIC4.67□□□□□ -1.66
CCDC61Q9Y6R9 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
CCDC61Q9Y6R9 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
CCDC61Q9Y6R9 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
CCDC61Q9Y6R9 RNU6-1083P-201ENST00000384022 107 ntBASIC4.66□□□□□ -1.66
CCDC61Q9Y6R9 MIR1236-201ENST00000408340 102 ntBASIC4.66□□□□□ -1.66
CCDC61Q9Y6R9 RNU4-47P-201ENST00000410876 114 ntBASIC4.66□□□□□ -1.66
CCDC61Q9Y6R9 SNORA25.13-201ENST00000516395 103 ntBASIC4.66□□□□□ -1.66
CCDC61Q9Y6R9 RN7SKP83-201ENST00000516512 178 ntBASIC4.66□□□□□ -1.66
CCDC61Q9Y6R9 MIR6841-201ENST00000637129 72 ntBASIC4.66□□□□□ -1.66
CCDC61Q9Y6R9 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
CCDC61Q9Y6R9 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.65□□□□□ -1.66
CCDC61Q9Y6R9 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.66
CCDC61Q9Y6R9 TNPO1P3-201ENST00000436471 2662 ntBASIC4.65□□□□□ -1.66
CCDC61Q9Y6R9 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC4.65□□□□□ -1.66
CCDC61Q9Y6R9 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
CCDC61Q9Y6R9 Y_RNA.494-201ENST00000384432 111 ntBASIC4.65□□□□□ -1.67
CCDC61Q9Y6R9 MIR515-2-201ENST00000384883 83 ntBASIC4.65□□□□□ -1.67
CCDC61Q9Y6R9 MIR515-1-201ENST00000384884 83 ntBASIC4.65□□□□□ -1.67
CCDC61Q9Y6R9 MIR708-201ENST00000390708 88 ntBASIC4.65□□□□□ -1.67
CCDC61Q9Y6R9 MIR548G-201ENST00000408442 89 ntBASIC4.65□□□□□ -1.67
CCDC61Q9Y6R9 MIR1267-201ENST00000408723 78 ntBASIC4.65□□□□□ -1.67
CCDC61Q9Y6R9 AL161788.1-201ENST00000441805 169 ntBASIC4.65□□□□□ -1.67
CCDC61Q9Y6R9 RNU1-98P-201ENST00000458992 160 ntBASIC4.65□□□□□ -1.67
CCDC61Q9Y6R9 RNU6-991P-201ENST00000516168 107 ntBASIC4.65□□□□□ -1.67
CCDC61Q9Y6R9 RNU6-90P-201ENST00000606352 106 ntBASIC4.65□□□□□ -1.67
CCDC61Q9Y6R9 SNORD3E-202ENST00000627253 216 ntBASIC4.65□□□□□ -1.67
CCDC61Q9Y6R9 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC61Q9Y6R9 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
CCDC61Q9Y6R9 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 RNU6-283P-201ENST00000364788 107 ntBASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 RPL23AP48-201ENST00000406913 488 ntBASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 RNU2-37P-201ENST00000410695 177 ntBASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 RPS26P3-201ENST00000470205 348 ntBASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 AC004057.1-201ENST00000485827 348 ntBASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 AL513043.2-201ENST00000573941 143 ntBASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 MIR3134-201ENST00000579433 74 ntBASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 AC020914.4-201ENST00000597690 277 ntBASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 uc_338.25-201ENST00000613756 156 ntBASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 CDH8-205ENST00000577730 8009 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC4.64□□□□□ -1.67
CCDC61Q9Y6R9 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC61Q9Y6R9 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
CCDC61Q9Y6R9 MIR340-201ENST00000362125 95 ntBASIC4.63□□□□□ -1.67
CCDC61Q9Y6R9 MIR448-201ENST00000362131 111 ntBASIC4.63□□□□□ -1.67
CCDC61Q9Y6R9 RNU1-105P-201ENST00000363470 161 ntBASIC4.63□□□□□ -1.67
CCDC61Q9Y6R9 HSPE1P26-201ENST00000405341 275 ntBASIC4.63□□□□□ -1.67
CCDC61Q9Y6R9 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC61Q9Y6R9 HMGN2P16-201ENST00000456802 261 ntBASIC4.63□□□□□ -1.67
CCDC61Q9Y6R9 RNU7-28P-201ENST00000516759 62 ntBASIC4.63□□□□□ -1.67
CCDC61Q9Y6R9 HMSD-204ENST00000526932 162 ntTSL 3 BASIC4.63□□□□□ -1.67
CCDC61Q9Y6R9 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC61Q9Y6R9 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
CCDC61Q9Y6R9 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC61Q9Y6R9 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
CCDC61Q9Y6R9 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC61Q9Y6R9 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC61Q9Y6R9 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
CCDC61Q9Y6R9 SNORA70.7-201ENST00000384159 133 ntBASIC4.62□□□□□ -1.67
CCDC61Q9Y6R9 RNU6-519P-201ENST00000410590 108 ntBASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 200.4 ms