Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 RNU6-57P-201ENST00000411348 103 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 AC060773.1-201ENST00000421698 310 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.77□□□□□ -2.13
NKX3-1Q99801 AC245102.2-201ENST00000448956 180 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 PCNPP5-201ENST00000452246 481 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 Y_RNA.631-201ENST00000459607 101 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.77□□□□□ -2.13
NKX3-1Q99801 AC067942.3-201ENST00000512025 362 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 RN7SKP295-201ENST00000517264 153 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 AP002001.1-203ENST00000534002 267 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 MIR4529-201ENST00000578110 78 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 SDR42E1P4-201ENST00000620894 481 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 uc_338.20-201ENST00000621563 178 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 AL606534.2-204ENST00000635008 178 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.77□□□□□ -2.13
NKX3-1Q99801 CENPCP1-201ENST00000533085 2578 ntBASIC1.77□□□□□ -2.13
NKX3-1Q99801 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.77□□□□□ -2.13
NKX3-1Q99801 AL359851.1-201ENST00000569460 4997 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 Y_RNA.11-201ENST00000362375 109 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 Y_RNA.39-201ENST00000362620 98 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 RNU6-23P-201ENST00000363283 107 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 Y_RNA.128-201ENST00000363391 112 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 RNU1-115P-201ENST00000365329 160 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 AC096920.1-201ENST00000423991 241 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 AL121890.1-201ENST00000435457 205 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 UQCRBP2-201ENST00000447827 297 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 snoU13.26-201ENST00000459452 105 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.76□□□□□ -2.13
NKX3-1Q99801 SNORA40.9-201ENST00000515895 93 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 RNU6-948P-201ENST00000516374 107 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 AC018448.1-201ENST00000552843 316 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 AC055872.1-201ENST00000570978 278 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.76□□□□□ -2.13
NKX3-1Q99801 MIR3171-201ENST00000584270 74 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 AC044792.1-201ENST00000593294 196 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 VN1R91P-201ENST00000594377 169 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 AL096840.1-201ENST00000603287 93 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 AC006001.4-201ENST00000622243 395 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 AC134503.1-201ENST00000633048 54 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 AL159152.1-201ENST00000635019 2587 ntBASIC1.76□□□□□ -2.13
NKX3-1Q99801 Y_RNA.28-201ENST00000362554 111 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 RNA5SP276-201ENST00000362580 94 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 U3.8-201ENST00000363675 217 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 RNU6-961P-201ENST00000363893 105 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 SNORA22B-201ENST00000383876 138 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 SNORA64-201ENST00000384674 134 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 MIR628-201ENST00000385229 95 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
NKX3-1Q99801 RNU2-20P-201ENST00000410425 191 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 AC016909.1-201ENST00000415916 166 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 MTND1P14-201ENST00000427400 950 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 MTCYBP6-201ENST00000441810 138 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.75□□□□□ -2.13
NKX3-1Q99801 RNU1-131P-201ENST00000458943 161 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 RNU6-408P-201ENST00000515910 100 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 RNU1-41P-201ENST00000516161 162 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 RNU6-1041P-201ENST00000516254 102 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 RNU1-48P-201ENST00000516400 162 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 MIR2355-201ENST00000517199 87 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
NKX3-1Q99801 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.75□□□□□ -2.13
NKX3-1Q99801 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.75□□□□□ -2.13
NKX3-1Q99801 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 U6.92-201ENST00000636464 89 ntBASIC1.75□□□□□ -2.13
NKX3-1Q99801 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.75□□□□□ -2.13
NKX3-1Q99801 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.74□□□□□ -2.13
NKX3-1Q99801 RNY3P4-201ENST00000384428 101 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 Y_RNA.498-201ENST00000384460 102 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 RNU6-1235P-201ENST00000384559 107 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 Y_RNA.645-201ENST00000391229 102 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 MIR548P-201ENST00000408336 84 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 MIR1185-2-201ENST00000408687 86 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 AL357134.1-201ENST00000445848 426 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 RNU6-498P-201ENST00000459468 107 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 RPL26P26-201ENST00000480251 434 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 AL163540.1-201ENST00000485382 386 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.74□□□□□ -2.13
NKX3-1Q99801 RNVU1-2-201ENST00000516326 135 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 RNU6-1012P-201ENST00000516606 109 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 RNU6-856P-201ENST00000516959 98 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 Y_RNA.711-201ENST00000516993 102 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 IGKV3-31-201ENST00000523109 329 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 HSBP1P1-201ENST00000555205 166 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 AC007229.1-201ENST00000590455 412 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 AC083806.3-201ENST00000614016 455 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 snoZ196.1-201ENST00000625269 89 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 AC131280.1-202ENST00000624067 4211 ntBASIC1.74□□□□□ -2.13
NKX3-1Q99801 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.73□□□□□ -2.13
NKX3-1Q99801 RNU5F-3P-201ENST00000363767 117 ntBASIC1.73□□□□□ -2.13
NKX3-1Q99801 SNORA40.19-201ENST00000390846 128 ntBASIC1.73□□□□□ -2.13
NKX3-1Q99801 RNA5SP501-201ENST00000410990 112 ntBASIC1.73□□□□□ -2.13
NKX3-1Q99801 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC1.73□□□□□ -2.13
NKX3-1Q99801 AC099677.2-201ENST00000436385 175 ntBASIC1.73□□□□□ -2.13
NKX3-1Q99801 AC114982.1-201ENST00000469402 321 ntBASIC1.73□□□□□ -2.13
NKX3-1Q99801 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.73□□□□□ -2.13
NKX3-1Q99801 RNU6-911P-201ENST00000516523 104 ntBASIC1.73□□□□□ -2.13
NKX3-1Q99801 AC025647.1-201ENST00000517879 253 ntBASIC1.73□□□□□ -2.13
NKX3-1Q99801 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
NKX3-1Q99801 MIR5089-201ENST00000580047 84 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 173.3 ms