Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 AGGF1P4-201ENST00000568249 801 ntBASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 AC005668.1-201ENST00000571142 476 ntBASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 NIFKP6-201ENST00000598115 845 ntBASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 AC010620.1-201ENST00000601088 1102 ntBASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 AC243829.6-201ENST00000612652 106 ntBASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 AC008147.4-201ENST00000617570 1204 ntBASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 MIR8065-201ENST00000620577 100 ntBASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.84□□□□□ -2.28
SHANK3Q9BYB0 AL391516.1-201ENST00000554380 2449 ntBASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 RNU4-21P-201ENST00000362802 126 ntBASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 Y_RNA.504-201ENST00000384481 104 ntBASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 RNU6-297P-201ENST00000384636 107 ntBASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 MIR1283-1-201ENST00000408494 87 ntBASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 RPS27P16-201ENST00000425758 201 ntBASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 MTCO3P29-201ENST00000432119 779 ntBASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 AL031274.1-201ENST00000450334 232 ntBASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 MTATP6P24-201ENST00000576835 677 ntBASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 MIR4514-201ENST00000581410 57 ntBASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 AL355802.3-201ENST00000607571 545 ntBASIC0.83□□□□□ -2.28
SHANK3Q9BYB0 MIR340-201ENST00000362125 95 ntBASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 SNORA2A-201ENST00000383885 135 ntBASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 SNORA32.2-201ENST00000384049 122 ntBASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 AL606923.1-201ENST00000406616 190 ntBASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 AC099677.2-201ENST00000436385 175 ntBASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 snoU13.30-201ENST00000458951 104 ntBASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 AC010531.2-201ENST00000465012 153 ntBASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 AC114982.1-201ENST00000469402 321 ntBASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 RNA5SP54-201ENST00000516951 92 ntBASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 AC090115.3-201ENST00000553218 849 ntBASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 HIF1AP1-201ENST00000553642 175 ntBASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 MIR4802-201ENST00000581881 80 ntBASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 AC004223.2-201ENST00000590309 544 ntBASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 AC120349.3-201ENST00000624377 529 ntBASIC0.82□□□□□ -2.28
SHANK3Q9BYB0 RNU6-545P-201ENST00000362681 104 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 Y_RNA.169-201ENST00000363745 96 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 Y_RNA.201-201ENST00000364052 96 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 RNU1-96P-201ENST00000364163 162 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 RNU6-996P-201ENST00000365438 107 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 RNU5A-6P-201ENST00000384136 116 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 RNU2-9P-201ENST00000410194 145 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 AC090960.1-201ENST00000421072 306 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 EIF1P1-201ENST00000421436 341 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 RNU6-1198P-201ENST00000516904 67 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 MIR4528-201ENST00000577763 90 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 MIR3937-201ENST00000580135 106 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 HSPE1P19-201ENST00000603327 295 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 RNU6-85P-201ENST00000605989 107 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 AC109347.2-201ENST00000610220 349 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 FAM157A-202ENST00000615155 405 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 Z69908.1-201ENST00000622603 247 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 RNU6-227P-201ENST00000362865 103 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 RNU4-66P-201ENST00000365199 138 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 MIR320B2-201ENST00000408479 138 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 AC060773.1-201ENST00000421698 310 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 ZNF736P8Y-201ENST00000451913 669 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 RNU7-63P-201ENST00000459054 62 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 snoU13.19-201ENST00000459148 104 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 AC091885.1-201ENST00000506658 268 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 AC011406.1-201ENST00000512440 370 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 RNU6-1069P-201ENST00000516612 133 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 MIR5006-201ENST00000583027 110 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 MIR3976-201ENST00000606807 139 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 OR5AK4P-201ENST00000635912 903 ntBASIC0.81□□□□□ -2.28
SHANK3Q9BYB0 RNU1-76P-201ENST00000362903 159 ntBASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 Y_RNA.481-201ENST00000384373 102 ntBASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 AL161935.2-201ENST00000414627 60 ntBASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 COX6CP10-201ENST00000416832 224 ntBASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 MTCO2P34-201ENST00000421994 607 ntBASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 AC027119.1-201ENST00000440877 241 ntBASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC0.8□□□□□ -2.28
SHANK3Q9BYB0 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.8□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 174.7 ms