Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNU6-460P-201ENST00000391158 108 ntBASIC3.87□□□□□ -1.79
CCDC39Q9UFE4 LGALS16-201ENST00000392051 624 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC39Q9UFE4 RNU6ATAC19P-201ENST00000408096 110 ntBASIC3.87□□□□□ -1.79
CCDC39Q9UFE4 AC092991.1-201ENST00000477176 376 ntBASIC3.87□□□□□ -1.79
CCDC39Q9UFE4 FCF1P8-201ENST00000510322 597 ntBASIC3.87□□□□□ -1.79
CCDC39Q9UFE4 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC39Q9UFE4 RNU1-143P-201ENST00000516296 146 ntBASIC3.87□□□□□ -1.79
CCDC39Q9UFE4 RNU6-589P-201ENST00000516485 107 ntBASIC3.87□□□□□ -1.79
CCDC39Q9UFE4 LARP7P3-201ENST00000579888 337 ntBASIC3.87□□□□□ -1.79
CCDC39Q9UFE4 AC006130.2-201ENST00000586202 326 ntBASIC3.87□□□□□ -1.79
CCDC39Q9UFE4 U1.23-201ENST00000610293 146 ntBASIC3.87□□□□□ -1.79
CCDC39Q9UFE4 RNU1-68P-201ENST00000615382 146 ntBASIC3.87□□□□□ -1.79
CCDC39Q9UFE4 U1.39-201ENST00000621562 146 ntBASIC3.87□□□□□ -1.79
CCDC39Q9UFE4 AL359693.1-201ENST00000614959 2407 ntBASIC3.87□□□□□ -1.79
CCDC39Q9UFE4 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.87□□□□□ -1.79
CCDC39Q9UFE4 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC39Q9UFE4 AC008264.2-201ENST00000610193 3731 ntBASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 AC017071.1-201ENST00000564407 2204 ntBASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 Y_RNA.498-201ENST00000384460 102 ntBASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 SNORD37.2-201ENST00000391075 66 ntBASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 MIR888-201ENST00000401186 77 ntBASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 RNU2-54P-201ENST00000410299 190 ntBASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 RNA5SP89-201ENST00000410300 108 ntBASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 RNU2-68P-201ENST00000410878 191 ntBASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 AC023632.4-201ENST00000517783 191 ntBASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 AC109810.1-201ENST00000534066 224 ntBASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 MIR5571-201ENST00000577998 113 ntBASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 AP001340.1-201ENST00000624405 217 ntBASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 AC010733.2-201ENST00000589496 5702 ntBASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
CCDC39Q9UFE4 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 AL136164.4-201ENST00000625013 2135 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 MTND5P35-201ENST00000557537 1720 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 RNU4-10P-201ENST00000364383 140 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 MIR218-2-201ENST00000385006 110 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 RN7SKP111-201ENST00000410349 271 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 RNU6-1245P-201ENST00000411130 106 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 AC006461.1-201ENST00000412637 326 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 NDUFB4P7-201ENST00000423198 363 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 AC112220.1-201ENST00000434628 355 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 AC006026.2-201ENST00000457376 180 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 RN7SL542P-201ENST00000467147 294 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 RNA5SP217-201ENST00000515959 91 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 AP004607.1-201ENST00000524456 203 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 AC023043.3-201ENST00000593113 385 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 U6.99-201ENST00000637524 83 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 PSMD5-AS1-215ENST00000640622 205 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 AC068700.1-201ENST00000565862 3754 ntBASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
CCDC39Q9UFE4 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 Y_RNA.329-201ENST00000365209 107 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 MIR626-201ENST00000385032 94 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 ELOCP21-201ENST00000412558 336 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 AC009963.1-201ENST00000417265 157 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 AL590383.1-201ENST00000428602 75 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 GPM6BP3-201ENST00000442797 145 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 RBMY2UP-201ENST00000453474 324 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 RNA5SP310-201ENST00000459084 116 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 RPL30P12-201ENST00000474666 353 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 KC877373.1-201ENST00000479066 408 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 RNU5E-3P-201ENST00000515913 68 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 RNU6-168P-201ENST00000516189 101 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 RNU2-56P-201ENST00000516826 190 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 Y_RNA.712-201ENST00000517011 92 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 SCARNA20.6-201ENST00000517251 106 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 CYCSP23-201ENST00000519781 313 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 AP001328.1-201ENST00000528550 176 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 AC090049.2-201ENST00000550377 109 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 AL356157.2-201ENST00000605122 111 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 AL078604.3-201ENST00000615580 211 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 AC002076.2-201ENST00000617362 122 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 AC024581.2-201ENST00000619986 252 ntBASIC3.84□□□□□ -1.79
CCDC39Q9UFE4 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
CCDC39Q9UFE4 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 AC093831.2-201ENST00000624393 3427 ntBASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 RNU6-942P-201ENST00000363002 107 ntBASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 RNU6-801P-201ENST00000364087 105 ntBASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 SNORA36A-201ENST00000384221 132 ntBASIC3.83□□□□□ -1.8
CCDC39Q9UFE4 RPL32P35-201ENST00000415214 394 ntBASIC3.83□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 194 ms