Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RNA5SP119-201ENST00000362715 117 ntBASIC2.59□□□□□ -1.99
CCDC28AQ8IWP9 Y_RNA.179-201ENST00000363844 90 ntBASIC2.59□□□□□ -1.99
CCDC28AQ8IWP9 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.59□□□□□ -1.99
CCDC28AQ8IWP9 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC2.59□□□□□ -1.99
CCDC28AQ8IWP9 AL096678.1-201ENST00000438877 472 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC28AQ8IWP9 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC28AQ8IWP9 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC28AQ8IWP9 RNU6-344P-201ENST00000516635 111 ntBASIC2.59□□□□□ -1.99
CCDC28AQ8IWP9 RN7SKP49-201ENST00000516675 260 ntBASIC2.59□□□□□ -1.99
CCDC28AQ8IWP9 RNU6-1098P-201ENST00000516772 96 ntBASIC2.59□□□□□ -1.99
CCDC28AQ8IWP9 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC2.59□□□□□ -1.99
CCDC28AQ8IWP9 MIR4680-201ENST00000580906 66 ntBASIC2.59□□□□□ -1.99
CCDC28AQ8IWP9 RPS29P30-201ENST00000600975 111 ntBASIC2.59□□□□□ -1.99
CCDC28AQ8IWP9 HNRNPDLP4-201ENST00000605144 301 ntBASIC2.59□□□□□ -1.99
CCDC28AQ8IWP9 U3.45-201ENST00000607547 219 ntBASIC2.59□□□□□ -1.99
CCDC28AQ8IWP9 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -2
CCDC28AQ8IWP9 AC073346.2-201ENST00000624724 2058 ntBASIC2.59□□□□□ -2
CCDC28AQ8IWP9 Z82195.2-201ENST00000612348 18351 ntBASIC2.58□□□□□ -2
CCDC28AQ8IWP9 RNA5SP361-201ENST00000362686 118 ntBASIC2.58□□□□□ -2
CCDC28AQ8IWP9 U8.12-201ENST00000384701 133 ntBASIC2.58□□□□□ -2
CCDC28AQ8IWP9 MIR554-201ENST00000384874 96 ntBASIC2.58□□□□□ -2
CCDC28AQ8IWP9 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.58□□□□□ -2
CCDC28AQ8IWP9 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.58□□□□□ -2
CCDC28AQ8IWP9 AC009238.1-201ENST00000442165 424 ntBASIC2.58□□□□□ -2
CCDC28AQ8IWP9 AC009237.6-201ENST00000446969 424 ntBASIC2.58□□□□□ -2
CCDC28AQ8IWP9 RBMY2UP-201ENST00000453474 324 ntBASIC2.58□□□□□ -2
CCDC28AQ8IWP9 SCARNA15.1-201ENST00000516384 125 ntBASIC2.58□□□□□ -2
CCDC28AQ8IWP9 Y_RNA.683-201ENST00000516508 93 ntBASIC2.58□□□□□ -2
CCDC28AQ8IWP9 CYCSP23-201ENST00000519781 313 ntBASIC2.58□□□□□ -2
CCDC28AQ8IWP9 AC022616.4-201ENST00000522985 181 ntBASIC2.58□□□□□ -2
CCDC28AQ8IWP9 AC040926.1-201ENST00000530195 238 ntBASIC2.58□□□□□ -2
CCDC28AQ8IWP9 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.58□□□□□ -2
CCDC28AQ8IWP9 MIR6810-201ENST00000622701 70 ntBASIC2.58□□□□□ -2
CCDC28AQ8IWP9 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC2.58□□□□□ -2
CCDC28AQ8IWP9 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.58□□□□□ -2
CCDC28AQ8IWP9 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
CCDC28AQ8IWP9 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.58□□□□□ -2
CCDC28AQ8IWP9 SNORA25B-201ENST00000365507 128 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 RNU6-318P-201ENST00000384283 103 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 SNORA51.11-201ENST00000384442 131 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 RNU6-1160P-201ENST00000384546 104 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 MIR606-201ENST00000384851 96 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 MIR329-1-201ENST00000385028 80 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 SNORD78.2-201ENST00000391076 69 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 Y_RNA.645-201ENST00000391229 102 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 RNU6-101P-201ENST00000410323 104 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 RNA5SP274-201ENST00000410484 108 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 AC004866.1-201ENST00000411748 78 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 ATP5A1P2-201ENST00000412323 255 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 DBIP2-201ENST00000419076 262 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.57□□□□□ -2
CCDC28AQ8IWP9 CR769767.1-201ENST00000436337 346 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 RPS29P6-201ENST00000438196 145 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 RPS3AP12-201ENST00000443616 753 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 AC007395.1-201ENST00000451333 677 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.57□□□□□ -2
CCDC28AQ8IWP9 AC091179.3-201ENST00000474761 144 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 RN7SL633P-201ENST00000488974 297 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 AC018868.1-201ENST00000491307 315 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.57□□□□□ -2
CCDC28AQ8IWP9 SCARNA13-201ENST00000516672 275 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.57□□□□□ -2
CCDC28AQ8IWP9 AC104695.3-201ENST00000604052 296 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 SNORD11B-201ENST00000607707 90 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 AL162373.1-201ENST00000620433 407 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 U4.6-201ENST00000621618 127 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 MIR1248-201ENST00000629190 106 ntBASIC2.57□□□□□ -2
CCDC28AQ8IWP9 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.57□□□□□ -2
CCDC28AQ8IWP9 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.57□□□□□ -2
CCDC28AQ8IWP9 MTND5P35-201ENST00000557537 1720 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC28AQ8IWP9 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC2.56□□□□□ -2
CCDC28AQ8IWP9 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.56□□□□□ -2
CCDC28AQ8IWP9 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.56□□□□□ -2
CCDC28AQ8IWP9 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.56□□□□□ -2
CCDC28AQ8IWP9 SNORD9-201ENST00000362566 104 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 SNORA38-201ENST00000363946 132 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 RNU4-50P-201ENST00000364361 141 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 Y_RNA.389-201ENST00000383924 113 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 RNU6-1145P-201ENST00000384246 107 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 RNU6-611P-201ENST00000384276 104 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 RNU6-1026P-201ENST00000384465 108 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 RNU6-1072P-201ENST00000384703 107 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 RNU6-443P-201ENST00000384780 107 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 AL357139.1-201ENST00000407792 426 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 RN7SKP111-201ENST00000410349 271 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 Y_RNA.595-201ENST00000410403 105 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 SUMO1P4-201ENST00000429430 302 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC2.56□□□□□ -2
CCDC28AQ8IWP9 AC010095.1-201ENST00000443543 144 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 IFNA11P-201ENST00000446352 526 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC2.56□□□□□ -2
CCDC28AQ8IWP9 RNU7-14P-201ENST00000459331 62 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.56□□□□□ -2
CCDC28AQ8IWP9 RNA5SP367-201ENST00000516557 118 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 SNORA70.18-201ENST00000516696 98 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 RNU6-667P-201ENST00000517186 102 ntBASIC2.56□□□□□ -2
CCDC28AQ8IWP9 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC2.56□□□□□ -2
CCDC28AQ8IWP9 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.56□□□□□ -2
CCDC28AQ8IWP9 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 207.6 ms