Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC1.05□□□□□ -2.24
SHANK3Q9BYB0 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 CBX3P1-201ENST00000325243 554 ntBASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 S100A12-201ENST00000368737 518 ntAPPRIS P1 TSL 1 (best) BASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 AC078809.1-201ENST00000427601 140 ntBASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 AC073614.1-201ENST00000438690 650 ntBASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 RPL31P3-201ENST00000458430 332 ntBASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 AC098862.1-201ENST00000504991 413 ntBASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 RBBP4P6-201ENST00000508098 202 ntBASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 MTND3P5-201ENST00000512798 333 ntBASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 AC109479.2-201ENST00000517842 174 ntBASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 AC022616.3-201ENST00000523940 148 ntBASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 AP003392.2-201ENST00000527269 208 ntBASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 AC087883.1-201ENST00000551882 391 ntBASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 AL078605.1-201ENST00000603529 500 ntBASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 AL136370.1-201ENST00000608166 691 ntBASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 AC079248.2-201ENST00000623779 326 ntBASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 SEPT14P19-203ENST00000633205 211 ntBASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC1.04□□□□□ -2.24
SHANK3Q9BYB0 RNU6-78P-201ENST00000362897 107 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AL031577.2-201ENST00000404133 280 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 RPS3AP3-201ENST00000411933 242 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AC011233.1-201ENST00000422812 283 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 RPL39P29-201ENST00000447779 157 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AC013470.1-201ENST00000453438 462 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 RNU7-182P-201ENST00000459009 62 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 GMFBP1-201ENST00000467831 427 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 COPS8P3-201ENST00000526024 482 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 LINC01493-203ENST00000534756 509 ntTSL 3 BASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 MIR4636-201ENST00000582271 80 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AC130454.1-201ENST00000622948 401 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 U3.4-201ENST00000363352 213 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 SNORD114-6-201ENST00000364393 72 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 Y_RNA.332-201ENST00000365271 113 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 RNU6-25P-201ENST00000383873 107 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 RNU6-1029P-201ENST00000384109 107 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 RNU6-48P-201ENST00000384161 107 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 RNU6-15P-201ENST00000384534 107 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 RNU6-939P-201ENST00000384634 107 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 RNU6-29P-201ENST00000384637 107 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 RNU6-1106P-201ENST00000390845 107 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 MIR1265-201ENST00000408444 86 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 OPA1-AS1-201ENST00000433105 492 ntTSL 3 BASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 MTATP6P16-201ENST00000434543 526 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AL022238.1-201ENST00000442557 355 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AL035666.1-201ENST00000446195 348 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AC079382.1-201ENST00000493346 557 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 RNU6-1129P-201ENST00000515964 104 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 RNA5SP285-201ENST00000516619 119 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AC109446.1-201ENST00000566172 220 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 MIR8074-201ENST00000615081 81 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 MIR6759-201ENST00000638110 65 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AC099654.13-201ENST00000639774 207 ntBASIC1.03□□□□□ -2.24
SHANK3Q9BYB0 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 Y_RNA.22-201ENST00000362492 102 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 SNORD115-3-201ENST00000363100 82 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 RNA5SP493-201ENST00000364115 91 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 SNORA72.3-201ENST00000365074 132 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 RNU6-169P-201ENST00000365336 107 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 RNU6-434P-201ENST00000384376 107 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 MIR454-201ENST00000390180 115 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 AC009961.2-201ENST00000435771 251 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 UBE2D3P4-201ENST00000441973 436 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 AL122001.1-201ENST00000457027 370 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 RNA5SP57-201ENST00000459463 123 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 AC023050.3-201ENST00000541142 333 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 AC008752.3-201ENST00000588113 712 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 BNIP3P16-201ENST00000589779 534 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 AC245014.2-201ENST00000603689 287 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 AC090578.1-201ENST00000604955 591 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 AC246785.4-201ENST00000605374 287 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 AP001506.1-201ENST00000615444 211 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 AF246928.1-201ENST00000623768 87 ntBASIC1.02□□□□□ -2.25
SHANK3Q9BYB0 RNU6-43P-201ENST00000384302 107 ntBASIC1.01□□□□□ -2.25
SHANK3Q9BYB0 RNU6-1274P-201ENST00000384557 107 ntBASIC1.01□□□□□ -2.25
SHANK3Q9BYB0 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC1.01□□□□□ -2.25
SHANK3Q9BYB0 MRPL35P3-201ENST00000421557 364 ntBASIC1.01□□□□□ -2.25
SHANK3Q9BYB0 AL133217.1-201ENST00000450980 425 ntBASIC1.01□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 185.4 ms