Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC3.47□□□□□ -1.85
KRT40Q6A162 RN7SL633P-201ENST00000488974 297 ntBASIC3.47□□□□□ -1.85
KRT40Q6A162 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.47□□□□□ -1.85
KRT40Q6A162 RNU2-53P-201ENST00000516257 147 ntBASIC3.47□□□□□ -1.85
KRT40Q6A162 RNY3P15-201ENST00000516297 97 ntBASIC3.47□□□□□ -1.85
KRT40Q6A162 RNU6-388P-201ENST00000517012 105 ntBASIC3.47□□□□□ -1.85
KRT40Q6A162 RNU6-389P-201ENST00000517048 105 ntBASIC3.47□□□□□ -1.85
KRT40Q6A162 AC034114.1-201ENST00000520293 285 ntBASIC3.47□□□□□ -1.85
KRT40Q6A162 AP004607.1-201ENST00000524456 203 ntBASIC3.47□□□□□ -1.85
KRT40Q6A162 LINC00933-203ENST00000559812 219 ntBASIC3.47□□□□□ -1.85
KRT40Q6A162 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.47□□□□□ -1.85
KRT40Q6A162 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC3.47□□□□□ -1.85
KRT40Q6A162 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
KRT40Q6A162 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
KRT40Q6A162 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.46□□□□□ -1.86
KRT40Q6A162 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.46□□□□□ -1.86
KRT40Q6A162 RNU6-50P-201ENST00000362356 103 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 RNU4-82P-201ENST00000362443 140 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 Y_RNA.447-201ENST00000384184 113 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 RNU6-713P-201ENST00000384761 107 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 MIR190B-201ENST00000401119 79 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 RPL26P27-201ENST00000414397 437 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 TRAPPC2P4-201ENST00000421750 331 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 USP9YP16-201ENST00000430287 407 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 AL031659.1-201ENST00000447075 539 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 AC108938.1-201ENST00000451204 136 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 USP9YP23-201ENST00000455085 407 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.46□□□□□ -1.86
KRT40Q6A162 AC117440.1-201ENST00000474107 571 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 AC091874.1-201ENST00000511402 339 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 RN7SKP132-201ENST00000516001 208 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 MRPS36P4-201ENST00000534436 298 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC3.46□□□□□ -1.86
KRT40Q6A162 AC007619.1-201ENST00000544086 412 ntTSL 5 BASIC3.46□□□□□ -1.86
KRT40Q6A162 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
KRT40Q6A162 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC3.46□□□□□ -1.86
KRT40Q6A162 AC104581.2-201ENST00000572227 430 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 AC010928.2-201ENST00000588017 287 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 AC020895.1-201ENST00000595362 272 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 AL390123.1-201ENST00000603216 237 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 MIR6134-201ENST00000617606 109 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
KRT40Q6A162 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
KRT40Q6A162 AL355596.1-201ENST00000565399 3996 ntBASIC3.46□□□□□ -1.86
KRT40Q6A162 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.46□□□□□ -1.86
KRT40Q6A162 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
KRT40Q6A162 AL035425.3-201ENST00000564206 4996 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
KRT40Q6A162 Y_RNA.19-201ENST00000362462 99 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 RNU6-770P-201ENST00000363929 105 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 Y_RNA.471-201ENST00000384312 102 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 Y_RNA.526-201ENST00000384572 110 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 MIR628-201ENST00000385229 95 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
KRT40Q6A162 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 AL358453.1-201ENST00000422522 250 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC3.45□□□□□ -1.86
KRT40Q6A162 AC243964.1-201ENST00000441814 261 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.45□□□□□ -1.86
KRT40Q6A162 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.45□□□□□ -1.86
KRT40Q6A162 LINC01399-202ENST00000458450 244 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 SNORD127-201ENST00000458892 86 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 RN7SKP210-201ENST00000459176 261 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 RPS29P26-201ENST00000477483 171 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 RPS29P20-201ENST00000489592 171 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 RPS27AP10-201ENST00000496103 208 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 AC010469.2-201ENST00000496412 480 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 AC107222.1-201ENST00000510899 637 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 RNU6-928P-201ENST00000516876 104 ntBASIC3.45□□□□□ -1.86
KRT40Q6A162 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC3.45□□□□□ -1.86
KRT40Q6A162 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.45□□□□□ -1.86
KRT40Q6A162 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.45□□□□□ -1.86
KRT40Q6A162 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
KRT40Q6A162 Y_RNA.288-201ENST00000364854 92 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 RNU1-100P-201ENST00000365255 165 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 Y_RNA.358-201ENST00000365491 99 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 Y_RNA.518-201ENST00000384552 113 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 MIR888-201ENST00000401186 77 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 RNU6ATAC23P-201ENST00000408448 123 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 RNU2-38P-201ENST00000410856 79 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 RN7SKP58-201ENST00000411010 305 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.44□□□□□ -1.86
KRT40Q6A162 MTCO3P19-201ENST00000415864 321 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 RPL21P38-201ENST00000418090 167 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 HMGN2P30-201ENST00000423237 256 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
KRT40Q6A162 HMGN2P16-201ENST00000456802 261 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 RNU6-1132P-201ENST00000459214 107 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 Y_RNA.638-201ENST00000459374 113 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 AC025465.3-201ENST00000510570 311 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 HSPE1P20-201ENST00000538133 289 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 AC005357.1-201ENST00000588399 301 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 AL442067.1-201ENST00000613261 223 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
KRT40Q6A162 AC022336.2-201ENST00000568966 2538 ntBASIC3.44□□□□□ -1.86
KRT40Q6A162 AC010615.1-201ENST00000594254 1764 ntBASIC3.43□□□□□ -1.86
KRT40Q6A162 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.43□□□□□ -1.86
KRT40Q6A162 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
KRT40Q6A162 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.43□□□□□ -1.86
KRT40Q6A162 Y_RNA.458-201ENST00000384240 102 ntBASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 188.9 ms