Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 Y_RNA.357-201ENST00000365487 109 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 Y_RNA.412-201ENST00000384001 104 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 SNORA36C-201ENST00000384289 132 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 RNA5SP213-201ENST00000391031 106 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 RAB28P5-201ENST00000427490 651 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 RPL23AP3-201ENST00000453844 468 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 RPS4XP13-201ENST00000483219 789 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 PHBP14-201ENST00000512887 367 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 SNORA72.7-201ENST00000516349 94 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 AC093331.1-201ENST00000521474 169 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 BNIP3P5-201ENST00000562290 498 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 MIR548X2-201ENST00000579776 100 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 SCARNA4-201ENST00000629045 128 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 LINC01002-215ENST00000632203 314 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 MIR4679-1-201ENST00000637619 75 ntBASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
CCDC39Q9UFE4 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 AL079305.1-201ENST00000623159 3008 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 SNORA73.2-201ENST00000364946 201 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 RNU6-1175P-201ENST00000365200 107 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 RNU6-20P-201ENST00000384106 107 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 RNU1-139P-201ENST00000391307 165 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 MTHFD2P2-201ENST00000407725 247 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 RNA5SP129-201ENST00000410276 118 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 RNA5SP293-201ENST00000410527 113 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 RNA5SP31-201ENST00000411144 127 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 AL513331.1-201ENST00000411908 397 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 AL390729.2-201ENST00000416137 156 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 MTND4LP9-201ENST00000427694 174 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 AC079780.1-201ENST00000428259 207 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 AL512844.2-201ENST00000433990 593 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 RPS27P29-201ENST00000463110 252 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 AP000870.1-201ENST00000472927 406 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 RPL23AP75-201ENST00000491601 451 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 PDCD5P2-201ENST00000507570 312 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 RN7SKP21-201ENST00000516503 220 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 RNU6-567P-201ENST00000516746 107 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 MIR3160-1-201ENST00000577972 85 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 AC006001.4-201ENST00000622243 395 ntBASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
CCDC39Q9UFE4 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 Y_RNA.7-201ENST00000362352 102 ntBASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 Y_RNA.238-201ENST00000364441 102 ntBASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 RNU6-211P-201ENST00000384047 107 ntBASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 RNU6-882P-201ENST00000391025 103 ntBASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 AC125238.1-201ENST00000448842 249 ntBASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 RPS27AP9-201ENST00000477681 438 ntBASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 SNORA40.9-201ENST00000515895 93 ntBASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 RNU6-377P-201ENST00000515965 102 ntBASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 RN7SKP49-201ENST00000516675 260 ntBASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 RNU4ATAC3P-201ENST00000516699 126 ntBASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 RNU6-1234P-201ENST00000516877 103 ntBASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 SUMO2P18-201ENST00000518873 252 ntBASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 UTP23-205ENST00000520733 369 ntTSL 3 BASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 VN1R85P-201ENST00000601587 426 ntBASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 AL161798.1-201ENST00000604630 131 ntBASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 RNU1-30P-201ENST00000606575 163 ntBASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 AC012531.5-201ENST00000611375 151 ntBASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
CCDC39Q9UFE4 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 AL391516.1-201ENST00000554380 2449 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 Y_RNA.75-201ENST00000362927 97 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 RNU6-1167P-201ENST00000363227 94 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 RNU6-1255P-201ENST00000363434 112 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 RNU6-336P-201ENST00000364891 107 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 Y_RNA.331-201ENST00000365267 102 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 MIR32-201ENST00000384965 70 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 MIR10A-201ENST00000385043 110 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 BTF3L4P2-201ENST00000392798 346 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 RNU2-2P-201ENST00000410396 191 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 AL627311.1-201ENST00000431514 115 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 AL359073.1-201ENST00000448036 403 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 RPL21P13-201ENST00000488305 481 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 ENSA-210ENST00000503241 574 ntTSL 3 BASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 RNU4-57P-201ENST00000515980 135 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 RNU6-1114P-201ENST00000516022 107 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 Y_RNA.686-201ENST00000516548 134 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 RNA5SP468-201ENST00000516782 93 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 IGKV2D-19-201ENST00000523346 262 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 AC055872.1-201ENST00000570978 278 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 RNU2-4P-201ENST00000606190 192 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 U2.15-201ENST00000611544 191 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 RMST_6.1-201ENST00000611980 203 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 U2.16-201ENST00000613119 191 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 U2.12-201ENST00000613778 191 ntBASIC4.11□□□□□ -1.75
CCDC39Q9UFE4 U2.9-201ENST00000615427 191 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 170.8 ms