Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 MLLT10P2-201ENST00000506434 249 ntBASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 SCARNA14-201ENST00000516903 136 ntBASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 RN7SKP272-201ENST00000516988 232 ntBASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 AL161629.2-201ENST00000615347 275 ntBASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 OR4G2P-202ENST00000641004 1759 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 RNU6-428P-201ENST00000362942 107 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 Y_RNA.127-201ENST00000363386 109 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 RNU6-818P-201ENST00000364837 108 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 GTSF1L-202ENST00000373005 459 ntAPPRIS ALT2 TSL 3 BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 MIR569-201ENST00000385228 96 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 MIR301A-201ENST00000385261 86 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 RPS4XP3-201ENST00000398541 413 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 AC024067.1-201ENST00000426199 223 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 AL591419.1-201ENST00000427423 339 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 NUTF2P7-201ENST00000453086 375 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 RN7SL442P-201ENST00000473804 320 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 YWHAEP4-201ENST00000505390 198 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 RNU4ATAC15P-201ENST00000516415 126 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 RNA5SP471-201ENST00000516971 106 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 LINC02442-202ENST00000540761 382 ntTSL 2 BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 AC008749.1-201ENST00000597650 306 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 RPL23AP88-201ENST00000605759 454 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 AC005828.6-201ENST00000606610 232 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 AC005046.1-201ENST00000608515 625 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 AC048347.1-201ENST00000624621 427 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 AC233981.2-201ENST00000611524 1614 ntBASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.2□□□□□ -1.74
CCDC39Q9UFE4 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 WDR49-207ENST00000479765 2108 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 FAP-214ENST00000627638 2569 ntAPPRIS ALT1 TSL 5 BASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 RNU1-75P-201ENST00000347264 129 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 MIR30E-201ENST00000362104 92 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 Y_RNA.43-201ENST00000362670 111 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 Y_RNA.218-201ENST00000364218 104 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 RNU6-879P-201ENST00000364328 108 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 RNU6-512P-201ENST00000364438 103 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 SNORA46.1-201ENST00000391069 153 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 AL357139.1-201ENST00000407792 426 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 RNU2-37P-201ENST00000410695 177 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 ARF4P2-201ENST00000430209 526 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 RPS15AP7-201ENST00000439294 405 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 MRPS10P1-201ENST00000448483 130 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 AC091179.1-201ENST00000461606 579 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 GMPSP1-201ENST00000514075 579 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 RNU6-1333P-201ENST00000516162 93 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 RNU6-927P-201ENST00000516199 100 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 RNU6-143P-201ENST00000516942 93 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 AC005476.1-201ENST00000554427 397 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 AC024614.2-201ENST00000577584 372 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 MIR5692C2-201ENST00000577959 77 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 MIR3690-201ENST00000580266 75 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 AC010928.2-201ENST00000588017 287 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 YWHAEP7-201ENST00000617508 639 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 AC090617.7-201ENST00000623952 126 ntBASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC39Q9UFE4 AL513302.2-201ENST00000562313 1842 ntBASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 PLS3-203ENST00000420625 3150 ntTSL 5 BASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 MIR412-201ENST00000362142 91 ntBASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 RNU6-653P-201ENST00000363074 106 ntBASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 Y_RNA.136-201ENST00000363444 102 ntBASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 RNU6-312P-201ENST00000364629 107 ntBASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 RNU4-9P-201ENST00000364951 139 ntBASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 RNU6-76P-201ENST00000384060 104 ntBASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 Y_RNA.571-201ENST00000384753 98 ntBASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 RNU6-1025P-201ENST00000410629 104 ntBASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 CRYBB2P1-203ENST00000415709 538 ntBASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 HMGN2P7-201ENST00000456186 273 ntBASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 AC008011.1-201ENST00000545989 227 ntBASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 AC112693.2-201ENST00000556538 232 ntBASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 AC008121.1-201ENST00000603244 268 ntBASIC4.18□□□□□ -1.74
CCDC39Q9UFE4 IGKV1OR2-6-201ENST00000603485 277 ntBASIC4.18□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 181.5 ms