Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 RPL23AP54-201ENST00000495129 419 ntBASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 RNU7-116P-201ENST00000516940 62 ntBASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 RNA5SP490-201ENST00000517141 136 ntBASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 MED28P6-201ENST00000558776 231 ntBASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 UBE2Q2P6-201ENST00000612666 153 ntBASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 SNORD98-201ENST00000636377 67 ntBASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC6.04□□□□□ -1.44
CCDC61Q9Y6R9 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 MIR372-201ENST00000362225 67 ntBASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 Y_RNA.78-201ENST00000362970 110 ntBASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 MIR624-201ENST00000385217 97 ntBASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 EI24P2-201ENST00000397776 1076 ntBASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 RNA5SP390-201ENST00000410191 113 ntBASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 RNA5SP127-201ENST00000411051 133 ntBASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 AC099548.1-201ENST00000421443 426 ntBASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 AL157831.1-201ENST00000426134 473 ntBASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 RN7SL812P-201ENST00000493791 279 ntBASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 MIR3923-201ENST00000579521 83 ntBASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 AL049861.1-201ENST00000603130 150 ntBASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 SMG1P4-204ENST00000523028 4131 ntBASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 CLCA3P-202ENST00000466454 3412 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC6.03□□□□□ -1.44
CCDC61Q9Y6R9 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 RNU6-1323P-201ENST00000384025 107 ntBASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 SRIP1-201ENST00000489235 288 ntBASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 IGKV2D-19-201ENST00000523346 262 ntBASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 AC009163.5-201ENST00000575421 637 ntBASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 AC006130.2-201ENST00000586202 326 ntBASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 AL021707.8-201ENST00000609428 183 ntBASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 MIR6867-201ENST00000610636 67 ntBASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 FAM27D1-201ENST00000612308 341 ntBASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 AC112484.5-201ENST00000624189 228 ntBASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 AC007256.1-201ENST00000392253 2765 ntBASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
CCDC61Q9Y6R9 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 AC004925.1-201ENST00000624256 2706 ntBASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 DLEU2_6.3-201ENST00000340052 136 ntBASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 RNU6-674P-201ENST00000363831 107 ntBASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 RN7SKP224-201ENST00000364140 325 ntBASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 CBX3P9-201ENST00000402326 552 ntBASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 Y_RNA.593-201ENST00000410292 98 ntBASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 Z74021.1-201ENST00000423610 407 ntBASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 AL358232.1-201ENST00000448030 501 ntBASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 THEMIS-204ENST00000537166 3830 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 AC091178.1-203ENST00000584586 279 ntBASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 AC097639.2-201ENST00000603159 172 ntBASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 TCL6_2.1-201ENST00000615162 119 ntBASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 DLEU2_6.2-201ENST00000620994 136 ntBASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 AC006971.1-201ENST00000407916 4486 ntBASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 BCLAF1P2-201ENST00000624956 2609 ntBASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 LINC02432-202ENST00000509161 2839 ntTSL 2 BASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 AC104260.2-201ENST00000623551 3497 ntBASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
CCDC61Q9Y6R9 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC6□□□□□ -1.45
CCDC61Q9Y6R9 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC6□□□□□ -1.45
CCDC61Q9Y6R9 ASAH2-201ENST00000329428 2184 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC61Q9Y6R9 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC6□□□□□ -1.45
CCDC61Q9Y6R9 SNORD114-7-201ENST00000362520 77 ntBASIC6□□□□□ -1.45
CCDC61Q9Y6R9 RNU1-14P-201ENST00000362759 152 ntBASIC6□□□□□ -1.45
CCDC61Q9Y6R9 Y_RNA.634-201ENST00000364811 113 ntBASIC6□□□□□ -1.45
CCDC61Q9Y6R9 Y_RNA.342-201ENST00000365352 113 ntBASIC6□□□□□ -1.45
CCDC61Q9Y6R9 RNA5SP235-201ENST00000365411 114 ntBASIC6□□□□□ -1.45
CCDC61Q9Y6R9 RNA5SP283-201ENST00000365604 119 ntBASIC6□□□□□ -1.45
CCDC61Q9Y6R9 RNA5SP151-201ENST00000365632 117 ntBASIC6□□□□□ -1.45
CCDC61Q9Y6R9 RNU6-242P-201ENST00000384359 107 ntBASIC6□□□□□ -1.45
CCDC61Q9Y6R9 RNA5SP187-201ENST00000384400 119 ntBASIC6□□□□□ -1.45
CCDC61Q9Y6R9 SNORA26-201ENST00000391286 122 ntBASIC6□□□□□ -1.45
CCDC61Q9Y6R9 RPL39P39-201ENST00000455840 151 ntBASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 239.9 ms