RNA–Protein interactions for RNA: ENST00000375427.4

SCN2A-202, Transcript of sodium voltage-gated channel alpha subunit 2, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN2A, Length 8,553 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN2A-202ENST00000375427 PELP1Q8IZL8 1130 aaKnown RBP10.33□□□□□ -0.76
SCN2A-202ENST00000375427 MYT1Q01538 1121 aa10.13□□□□□ -0.79
SCN2A-202ENST00000375427 TTBK1Q5TCY1 1321 aaPredicted RBP9.8□□□□□ -0.84
SCN2A-202ENST00000375427 ERICH6Q7L0X2 663 aa9.78□□□□□ -0.84
SCN2A-202ENST00000375427 YTHDC1Q96MU7 727 aaKnown RBP9.76□□□□□ -0.85
SCN2A-202ENST00000375427 CCER1Q8TC90 406 aaPredicted RBP9.74□□□□□ -0.85
SCN2A-202ENST00000375427 RANGAP1P46060 587 aaPredicted RBP9.28□□□□□ -0.92
SCN2A-202ENST00000375427 DAXXQ9UER7 740 aaPredicted RBP9.16□□□□□ -0.94
SCN2A-202ENST00000375427 CENPBP07199 599 aaPredicted RBP9.16□□□□□ -0.94
SCN2A-202ENST00000375427 GLIPR1L2Q4G1C9 344 aa9.1□□□□□ -0.95
SCN2A-202ENST00000375427 NEFLP07196 543 aa9.05□□□□□ -0.96
SCN2A-202ENST00000375427 RTL5Q5HYW3 569 aaPredicted RBP8.97□□□□□ -0.97
SCN2A-202ENST00000375427 CLSPNQ9HAW4 1339 aa8.94□□□□□ -0.98
SCN2A-202ENST00000375427 MYT1LQ9UL68 1186 aa8.92□□□□□ -0.98
SCN2A-202ENST00000375427 ZNF316A6NFI3 1004 aaPredicted RBP8.84□□□□□ -0.99
SCN2A-202ENST00000375427 POLR3GLQ9BT43 218 aa8.78□□□□□ -1
SCN2A-202ENST00000375427 EIF5BO60841 1220 aaKnown RBP8.75□□□□□ -1.01
SCN2A-202ENST00000375427 DCAF8L2P0C7V8 631 aa8.74□□□□□ -1.01
SCN2A-202ENST00000375427 TNNT2P45379 298 aaPredicted RBP8.65□□□□□ -1.02
SCN2A-202ENST00000375427 APLP2Q06481 763 aa8.61□□□□□ -1.03
SCN2A-202ENST00000375427 FAM9AQ8IZU1 332 aaPredicted RBP8.61□□□□□ -1.03
SCN2A-202ENST00000375427 ZEB1P37275 1124 aaPredicted RBP8.6□□□□□ -1.03
SCN2A-202ENST00000375427 ANP32BQ92688 251 aaKnown RBP8.6□□□□□ -1.03
SCN2A-202ENST00000375427 CDK11BP21127 795 aaKnown RBP8.59□□□□□ -1.03
SCN2A-202ENST00000375427 ZNF326Q5BKZ1 582 aaKnown RBP8.53□□□□□ -1.04
SCN2A-202ENST00000375427 CALRP27797 417 aaKnown RBP8.5□□□□□ -1.05
SCN2A-202ENST00000375427 EHMT2Q96KQ7 1210 aa8.5□□□□□ -1.05
SCN2A-202ENST00000375427 NCLP19338 710 aaKnown RBP8.46□□□□□ -1.05
SCN2A-202ENST00000375427 TRIM44Q96DX7 344 aaPredicted RBP8.46□□□□□ -1.05
SCN2A-202ENST00000375427 SLC24A1O60721 1099 aa8.42□□□□□ -1.06
SCN2A-202ENST00000375427 CDK11AQ9UQ88 783 aaPredicted RBP8.39□□□□□ -1.07
SCN2A-202ENST00000375427 ATP1B4Q9UN42 357 aaPredicted RBP8.37□□□□□ -1.07
SCN2A-202ENST00000375427 PTMSP20962 102 aa8.33□□□□□ -1.08
SCN2A-202ENST00000375427 PCGF6Q9BYE7 350 aa8.33□□□□□ -1.08
SCN2A-202ENST00000375427 ZBTB47Q9UFB7 747 aaPredicted RBP8.33□□□□□ -1.08
SCN2A-202ENST00000375427 ANP32AP39687 249 aaKnown RBP8.27□□□□□ -1.09
SCN2A-202ENST00000375427 AMER1Q5JTC6 1135 aaPredicted RBP8.21□□□□□ -1.1
SCN2A-202ENST00000375427 HSP90AA1P07900 732 aaKnown RBP8.2□□□□□ -1.1
SCN2A-202ENST00000375427 NEFMP07197 916 aa8.2□□□□□ -1.1
SCN2A-202ENST00000375427 TNNT3P45378 269 aaPredicted RBP8.17□□□□□ -1.1
SCN2A-202ENST00000375427 STK11IPQ8N1F8 1099 aa8.16□□□□□ -1.1
SCN2A-202ENST00000375427 GOLGA6L22H0YM25 854 aa8.16□□□□□ -1.1
SCN2A-202ENST00000375427 TRIM26Q12899 539 aaPredicted RBP8.16□□□□□ -1.1
SCN2A-202ENST00000375427 ANP32EQ9BTT0 268 aa8.11□□□□□ -1.11
SCN2A-202ENST00000375427 MEX3CQ5U5Q3 659 aaKnown RBP8.1□□□□□ -1.11
SCN2A-202ENST00000375427 UPF2Q9HAU5 1272 aaKnown RBP8.09□□□□□ -1.11
SCN2A-202ENST00000375427 APPP05067 770 aa8.08□□□□□ -1.12
SCN2A-202ENST00000375427 ERICH6BQ5W0A0 696 aa8.07□□□□□ -1.12
SCN2A-202ENST00000375427 DNTTIP2Q5QJE6 756 aaKnown RBP8.06□□□□□ -1.12
SCN2A-202ENST00000375427 PNNQ9H307 717 aaKnown RBP8.05□□□□□ -1.12
SCN2A-202ENST00000375427 LAS1LQ9Y4W2 734 aaKnown RBP8.05□□□□□ -1.12
SCN2A-202ENST00000375427 SUPT5HO00267 1087 aaKnown RBP8.04□□□□□ -1.12
SCN2A-202ENST00000375427 SETQ01105 290 aaPredicted RBP8.03□□□□□ -1.12
SCN2A-202ENST00000375427 NAP1L5Q96NT1 182 aaPredicted RBP8.03□□□□□ -1.12
SCN2A-202ENST00000375427 NEFHP12036 1026 aa8.01□□□□□ -1.13
SCN2A-202ENST00000375427 CNGB1Q14028 1251 aaPredicted RBP8□□□□□ -1.13
SCN2A-202ENST00000375427 CHAF1AQ13111 956 aaPredicted RBP8□□□□□ -1.13
SCN2A-202ENST00000375427 L1TD1Q5T7N2 865 aaKnown RBP8□□□□□ -1.13
SCN2A-202ENST00000375427 CANXP27824 592 aaKnown RBP8□□□□□ -1.13
SCN2A-202ENST00000375427 GOLGA6L1Q8N7Z2 621 aa7.99□□□□□ -1.13
SCN2A-202ENST00000375427 ARID4BQ4LE39 1312 aaPredicted RBP7.99□□□□□ -1.13
SCN2A-202ENST00000375427 SLC4A1APQ9BWU0 796 aaKnown RBP7.98□□□□□ -1.13
SCN2A-202ENST00000375427 ARXQ96QS3 562 aa7.98□□□□□ -1.13
SCN2A-202ENST00000375427 PTMAP06454 111 aaKnown RBP7.97□□□□□ -1.13
SCN2A-202ENST00000375427 A0A0U1RQG5 324 aaPredicted RBP7.97□□□□□ -1.13
SCN2A-202ENST00000375427 ZRSR1Q15695 479 aaKnown RBP7.96□□□□□ -1.13
SCN2A-202ENST00000375427 GOLGA6L6A8MZA4 724 aa7.96□□□□□ -1.13
SCN2A-202ENST00000375427 NEUROD1Q13562 356 aa7.96□□□□□ -1.13
SCN2A-202ENST00000375427 NRDCO43847 1150 aa7.96□□□□□ -1.14
SCN2A-202ENST00000375427 HMGB1P09429 215 aaKnown RBP7.96□□□□□ -1.14
SCN2A-202ENST00000375427 NPM2Q86SE8 214 aaKnown RBP7.95□□□□□ -1.14
SCN2A-202ENST00000375427 NBR1Q14596 966 aa7.95□□□□□ -1.14
SCN2A-202ENST00000375427 USP35Q9P2H5 1018 aa7.95□□□□□ -1.14
SCN2A-202ENST00000375427 GOLGA6L4A6NEF3 574 aa7.93□□□□□ -1.14
SCN2A-202ENST00000375427 LMOD2Q6P5Q4 547 aa7.92□□□□□ -1.14
SCN2A-202ENST00000375427 BCL11AQ9H165 835 aa7.91□□□□□ -1.14
SCN2A-202ENST00000375427 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.9□□□□□ -1.14
SCN2A-202ENST00000375427 BCANQ96GW7 911 aa7.89□□□□□ -1.15
SCN2A-202ENST00000375427 GTF3C3Q9Y5Q9 886 aa7.88□□□□□ -1.15
SCN2A-202ENST00000375427 NOC3LQ8WTT2 800 aaKnown RBP7.88□□□□□ -1.15
SCN2A-202ENST00000375427 WDR43Q15061 677 aaKnown RBP eCLIP7.87□□□□□ -1.15
SCN2A-202ENST00000375427 HRCP23327 699 aa7.86□□□□□ -1.15
SCN2A-202ENST00000375427 ANP32CO43423 234 aa7.86□□□□□ -1.15
SCN2A-202ENST00000375427 RRP12Q5JTH9 1297 aaKnown RBP7.85□□□□□ -1.15
SCN2A-202ENST00000375427 HAP1P54257 671 aaPredicted RBP7.84□□□□□ -1.15
SCN2A-202ENST00000375427 BECN1Q14457 450 aa7.83□□□□□ -1.16
SCN2A-202ENST00000375427 DIEXFQ68CQ4 756 aaKnown RBP7.82□□□□□ -1.16
SCN2A-202ENST00000375427 PODXL2Q9NZ53 605 aa7.82□□□□□ -1.16
SCN2A-202ENST00000375427 MSNP26038 577 aaKnown RBP7.82□□□□□ -1.16
SCN2A-202ENST00000375427 PRM3Q9NNZ6 103 aa7.82□□□□□ -1.16
SCN2A-202ENST00000375427 KIAA2012Q0VF49 1180 aa7.81□□□□□ -1.16
SCN2A-202ENST00000375427 ZNF526Q8TF50 670 aaPredicted RBP7.8□□□□□ -1.16
SCN2A-202ENST00000375427 NCBP3Q53F19 620 aaKnown RBP7.8□□□□□ -1.16
SCN2A-202ENST00000375427 PPM1GO15355 546 aaPredicted RBP7.8□□□□□ -1.16
SCN2A-202ENST00000375427 C14orf37Q86TY3 774 aa7.8□□□□□ -1.16
SCN2A-202ENST00000375427 DDRGK1Q96HY6 314 aa7.79□□□□□ -1.16
SCN2A-202ENST00000375427 KAT6BQ8WYB5 2073 aa7.79□□□□□ -1.16
SCN2A-202ENST00000375427 GOLGA6L3A6NEY3 463 aa7.76□□□□□ -1.17
SCN2A-202ENST00000375427 HMMRO75330 724 aa7.75□□□□□ -1.17
SCN2A-202ENST00000375427 TAF7LQ5H9L4 462 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms