Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNA5SP424-201ENST00000390988 115 ntBASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 OOSP1P1-201ENST00000423265 274 ntBASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 HSPD1P21-201ENST00000436541 245 ntBASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 AC007395.1-201ENST00000451333 677 ntBASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 AC010401.1-201ENST00000463867 348 ntBASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 RN7SL132P-201ENST00000478131 296 ntBASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 RPS4XP22-201ENST00000480755 780 ntBASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 HMGB1P22-201ENST00000505315 124 ntBASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 AC110768.1-201ENST00000509222 400 ntBASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 RNA5SP272-201ENST00000516095 111 ntBASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 RNU6-1095P-201ENST00000516148 108 ntBASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 ATP5F1P5-201ENST00000526403 760 ntBASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 AL157871.3-201ENST00000557231 293 ntBASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
CCDC39Q9UFE4 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 AP002088.1-201ENST00000382740 395 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 RNU6-1074P-201ENST00000383995 104 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 RNU2-43P-201ENST00000410306 190 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 RNU5A-5P-201ENST00000411054 116 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 AL592148.1-201ENST00000413568 445 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 AC006989.1-201ENST00000427212 131 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 VDAC1P3-201ENST00000434069 851 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 Z82188.1-201ENST00000436709 154 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 UQCRBP2-201ENST00000447827 297 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 AL160314.1-201ENST00000490836 438 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 AK3P2-201ENST00000507976 429 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 SNORD116-25-201ENST00000516517 92 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 RNU7-110P-201ENST00000516891 62 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 AP005660.1-201ENST00000522972 293 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 AK6P2-201ENST00000549020 471 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 RPL21P9-201ENST00000556149 474 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 MIR4423-201ENST00000580922 80 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 AL359881.1-201ENST00000602916 267 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 AL354798.1-201ENST00000622505 329 ntBASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
CCDC39Q9UFE4 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 AL353746.1-201ENST00000566293 6881 ntBASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 CCDC30-212ENST00000507855 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 UBE2L2-201ENST00000254302 429 ntBASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 MIR410-201ENST00000362222 80 ntBASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 RNU6-1325P-201ENST00000364905 105 ntBASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 SNORD6-201ENST00000365444 73 ntBASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 Y_RNA.446-201ENST00000384178 104 ntBASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 RNU6-318P-201ENST00000384283 103 ntBASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 RPL17P36-201ENST00000420302 549 ntBASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 TOMM20P4-201ENST00000427861 435 ntBASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 AC004975.1-201ENST00000428733 208 ntBASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 AC016700.2-201ENST00000446011 156 ntBASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 AC010409.1-201ENST00000487382 476 ntBASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 SNORA31.22-201ENST00000517204 135 ntBASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 HMGB1P14-201ENST00000557424 591 ntBASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 AC233702.2-202ENST00000562547 291 ntBASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 AC060766.3-201ENST00000591442 263 ntBASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 AC099506.2-201ENST00000623074 221 ntBASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
CCDC39Q9UFE4 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC4.21□□□□□ -1.73
CCDC39Q9UFE4 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
CCDC39Q9UFE4 AC135776.4-201ENST00000624300 1904 ntBASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 RNU6-1298P-201ENST00000362456 101 ntBASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 Y_RNA.33-201ENST00000362591 102 ntBASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 RNU6-227P-201ENST00000362865 103 ntBASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 Y_RNA.262-201ENST00000364641 102 ntBASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 RNU6-395P-201ENST00000365662 106 ntBASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 MIR30B-201ENST00000384850 88 ntBASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 snoU13.4-201ENST00000458916 104 ntBASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 snoU13.30-201ENST00000458951 104 ntBASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 AC073901.1-201ENST00000462471 408 ntBASIC4.21□□□□□ -1.74
CCDC39Q9UFE4 UBE2Q2P9-201ENST00000490086 202 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 172.9 ms