Protein–RNA interactions for Protein: Q96MW1

CCDC43, Coiled-coil domain-containing protein 43, humanhuman

Known RBP Predictions only

Length 224 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43Q96MW1 RNU6-6P-201ENST00000606623 107 ntBASIC2.18□□□□□ -2.06
CCDC43Q96MW1 AC006566.1-201ENST00000608943 513 ntBASIC2.18□□□□□ -2.06
CCDC43Q96MW1 AL359314.1-201ENST00000616913 261 ntBASIC2.18□□□□□ -2.06
CCDC43Q96MW1 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.18□□□□□ -2.06
CCDC43Q96MW1 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.17□□□□□ -2.06
CCDC43Q96MW1 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
CCDC43Q96MW1 RNU6-743P-201ENST00000364151 106 ntBASIC2.17□□□□□ -2.06
CCDC43Q96MW1 RNU4-91P-201ENST00000364778 135 ntBASIC2.17□□□□□ -2.06
CCDC43Q96MW1 RNU6-456P-201ENST00000384493 107 ntBASIC2.17□□□□□ -2.06
CCDC43Q96MW1 MIR583-201ENST00000384846 75 ntBASIC2.17□□□□□ -2.06
CCDC43Q96MW1 MIR29B2-201ENST00000385055 81 ntBASIC2.17□□□□□ -2.06
CCDC43Q96MW1 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC43Q96MW1 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC2.17□□□□□ -2.06
CCDC43Q96MW1 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC2.17□□□□□ -2.06
CCDC43Q96MW1 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC43Q96MW1 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC43Q96MW1 AC117532.1-201ENST00000514638 323 ntBASIC2.17□□□□□ -2.06
CCDC43Q96MW1 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC43Q96MW1 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC43Q96MW1 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC2.17□□□□□ -2.06
CCDC43Q96MW1 AC091135.1-201ENST00000585943 307 ntBASIC2.17□□□□□ -2.06
CCDC43Q96MW1 AL136363.2-201ENST00000604173 851 ntBASIC2.17□□□□□ -2.06
CCDC43Q96MW1 APOOP1-201ENST00000604695 592 ntBASIC2.17□□□□□ -2.06
CCDC43Q96MW1 AC008945.2-201ENST00000606056 604 ntBASIC2.17□□□□□ -2.06
CCDC43Q96MW1 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC2.17□□□□□ -2.06
CCDC43Q96MW1 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.17□□□□□ -2.06
CCDC43Q96MW1 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.17□□□□□ -2.06
CCDC43Q96MW1 RNU6-181P-201ENST00000363225 107 ntBASIC2.16□□□□□ -2.06
CCDC43Q96MW1 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
CCDC43Q96MW1 MIR676-201ENST00000390702 67 ntBASIC2.16□□□□□ -2.06
CCDC43Q96MW1 RNU2-20P-201ENST00000410425 191 ntBASIC2.16□□□□□ -2.06
CCDC43Q96MW1 Y_RNA.597-201ENST00000410463 100 ntBASIC2.16□□□□□ -2.06
CCDC43Q96MW1 AL353689.1-201ENST00000438895 199 ntBASIC2.16□□□□□ -2.06
CCDC43Q96MW1 FDX1P2-201ENST00000450769 375 ntBASIC2.16□□□□□ -2.06
CCDC43Q96MW1 RNA5SP233-201ENST00000459153 113 ntBASIC2.16□□□□□ -2.06
CCDC43Q96MW1 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.16□□□□□ -2.06
CCDC43Q96MW1 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC43Q96MW1 RNU6-445P-201ENST00000516949 107 ntBASIC2.16□□□□□ -2.06
CCDC43Q96MW1 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC2.16□□□□□ -2.06
CCDC43Q96MW1 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC2.16□□□□□ -2.06
CCDC43Q96MW1 MIR3913-1-201ENST00000577744 102 ntBASIC2.16□□□□□ -2.06
CCDC43Q96MW1 MIR5089-201ENST00000580047 84 ntBASIC2.16□□□□□ -2.06
CCDC43Q96MW1 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC2.16□□□□□ -2.06
CCDC43Q96MW1 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC2.16□□□□□ -2.06
CCDC43Q96MW1 AL627230.6-201ENST00000611129 280 ntBASIC2.16□□□□□ -2.06
CCDC43Q96MW1 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2.16□□□□□ -2.06
CCDC43Q96MW1 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC2.15□□□□□ -2.07
CCDC43Q96MW1 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC43Q96MW1 RNU4-48P-201ENST00000365559 182 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 RNU2-2P-201ENST00000410396 191 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
CCDC43Q96MW1 PIGFP2-201ENST00000421400 651 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 AC133104.1-201ENST00000429100 218 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 RPS15AP10-201ENST00000432472 382 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 AC244505.5-201ENST00000443639 207 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.15□□□□□ -2.07
CCDC43Q96MW1 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.15□□□□□ -2.07
CCDC43Q96MW1 snoU13.15-201ENST00000459407 104 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 UBL5P3-201ENST00000475112 231 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 MTND2P33-201ENST00000506452 1031 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 MTCO3P7-201ENST00000510008 774 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 RNU6-377P-201ENST00000515965 102 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 MIR4299-201ENST00000577899 72 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 AC243960.4-201ENST00000600532 288 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 AL158827.2-201ENST00000602494 330 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 U2.15-201ENST00000611544 191 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 U2.16-201ENST00000613119 191 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 U2.12-201ENST00000613778 191 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 U2.20-201ENST00000613956 192 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 AC091834.1-201ENST00000614543 472 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 U2.9-201ENST00000615427 191 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 U2.11-201ENST00000616345 191 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 U2.2-201ENST00000616535 191 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 U2.3-201ENST00000617785 191 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 U2.19-201ENST00000618602 191 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 RNU2-1-201ENST00000618664 191 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 U2.6-201ENST00000619225 191 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 U2.5-201ENST00000619465 191 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 U2.10-201ENST00000620268 191 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 uc_338.20-201ENST00000621563 178 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 AL691447.3-201ENST00000635020 330 ntBASIC2.15□□□□□ -2.07
CCDC43Q96MW1 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC43Q96MW1 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
CCDC43Q96MW1 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.14□□□□□ -2.07
CCDC43Q96MW1 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC43Q96MW1 RNU6-105P-201ENST00000363909 104 ntBASIC2.14□□□□□ -2.07
CCDC43Q96MW1 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
CCDC43Q96MW1 FGFR1OP2P1-201ENST00000395943 500 ntBASIC2.14□□□□□ -2.07
CCDC43Q96MW1 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC43Q96MW1 BX510359.4-201ENST00000423750 193 ntBASIC2.14□□□□□ -2.07
CCDC43Q96MW1 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC2.14□□□□□ -2.07
CCDC43Q96MW1 RPS6P15-201ENST00000431996 751 ntBASIC2.14□□□□□ -2.07
CCDC43Q96MW1 HMGN2P3-201ENST00000433603 273 ntBASIC2.14□□□□□ -2.07
CCDC43Q96MW1 HMGN2P5-201ENST00000436882 273 ntBASIC2.14□□□□□ -2.07
CCDC43Q96MW1 KATNBL1P3-201ENST00000443475 909 ntBASIC2.14□□□□□ -2.07
CCDC43Q96MW1 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC43Q96MW1 MTND1P18-201ENST00000448191 573 ntBASIC2.14□□□□□ -2.07
CCDC43Q96MW1 LINC00395-202ENST00000451570 415 ntTSL 3 BASIC2.14□□□□□ -2.07
CCDC43Q96MW1 PTP4A1P4-201ENST00000512479 322 ntBASIC2.14□□□□□ -2.07
CCDC43Q96MW1 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 176.5 ms