Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 LINC02471-203ENST00000641941 4752 ntBASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 MIR410-201ENST00000362222 80 ntBASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 SNORA60-201ENST00000362396 134 ntBASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-395P-201ENST00000365662 106 ntBASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC019155.1-201ENST00000382242 574 ntBASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 MIR301A-201ENST00000385261 86 ntBASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 MIR1251-201ENST00000408552 70 ntBASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AL117339.3-201ENST00000418733 162 ntBASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC083863.1-201ENST00000438811 231 ntBASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-143P-201ENST00000516942 93 ntBASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-1315P-201ENST00000517187 99 ntBASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 IGKV2D-36-201ENST00000518643 226 ntBASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 MIR1273C-201ENST00000578669 77 ntBASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 MIR3684-201ENST00000579779 74 ntBASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 B3GNTL1P2-201ENST00000603673 288 ntBASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AP001005.3-201ENST00000622049 129 ntBASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-227P-201ENST00000362865 103 ntBASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 Y_RNA.127-201ENST00000363386 109 ntBASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 Y_RNA.261-201ENST00000364631 102 ntBASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 Z82188.1-201ENST00000436709 154 ntBASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 HIGD1AP2-201ENST00000446367 280 ntBASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC005840.1-201ENST00000498412 377 ntBASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 SUMO2P6-201ENST00000505273 288 ntBASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AK3P2-201ENST00000507976 429 ntBASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 NOL8P1-201ENST00000508336 3529 ntBASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 ATP5F1P5-201ENST00000526403 760 ntBASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC103996.1-201ENST00000555468 102 ntBASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC090877.1-201ENST00000561418 344 ntBASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 MIR5692C2-201ENST00000577959 77 ntBASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AC099506.2-201ENST00000623074 221 ntBASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 Z99571.1-201ENST00000636677 394 ntBASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 UBE3AP2-201ENST00000429033 2259 ntBASIC5.09□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC5.09□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 GABRG2-210ENST00000638772 7669 ntTSL 5 BASIC5.09□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-989P-201ENST00000362756 107 ntBASIC5.09□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 SNORA38.1-201ENST00000364172 131 ntBASIC5.09□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC5.09□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNU6-926P-201ENST00000384075 107 ntBASIC5.09□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RNA5SP296-201ENST00000410523 111 ntBASIC5.09□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AL390729.2-201ENST00000416137 156 ntBASIC5.09□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 UQCRBP2-201ENST00000447827 297 ntBASIC5.09□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 DCLRE1CP1-201ENST00000454630 470 ntBASIC5.09□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 TOMM22P6-201ENST00000465035 409 ntBASIC5.09□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 RN7SL323P-201ENST00000494712 295 ntBASIC5.09□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 SNORD116-25-201ENST00000516517 92 ntBASIC5.09□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC5.09□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 AL157871.3-201ENST00000557231 293 ntBASIC5.09□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
SENP3-EIF4A1A0A087X0R7 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC5.09□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC5.09□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC5.09□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU6-312P-201ENST00000364629 107 ntBASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 Y_RNA.357-201ENST00000365487 109 ntBASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU6-213P-201ENST00000384051 104 ntBASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 SNORA40-201ENST00000388090 126 ntBASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL357139.1-201ENST00000407792 426 ntBASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU2-43P-201ENST00000410306 190 ntBASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 LAMTOR3P1-201ENST00000428620 370 ntBASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL592045.1-201ENST00000429867 352 ntBASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL591623.2-201ENST00000449978 222 ntBASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC073901.1-201ENST00000462471 408 ntBASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RPS29P27-201ENST00000463711 170 ntBASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 APOOP4-201ENST00000513530 597 ntBASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RNU4ATAC15P-201ENST00000516415 126 ntBASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC233702.2-202ENST00000562547 291 ntBASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 MIR4423-201ENST00000580922 80 ntBASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
SENP3-EIF4A1A0A087X0R7 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC5.08□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 203.6 ms