Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
SCN4AP35499 IL33-202ENST00000417746 2327 ntTSL 2 BASIC1.67□□□□□ -2.14
SCN4AP35499 RNU6-942P-201ENST00000363002 107 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 RNU6-960P-201ENST00000364056 120 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 RNU6-270P-201ENST00000364131 105 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 SNORA23-201ENST00000365128 182 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 RNU6-769P-201ENST00000384407 104 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 AC114491.1-201ENST00000416095 246 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN4AP35499 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC1.66□□□□□ -2.14
SCN4AP35499 MED14P1-201ENST00000430517 648 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC1.66□□□□□ -2.14
SCN4AP35499 RPL22P17-201ENST00000438729 315 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 MTND6P13-201ENST00000443510 523 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 RPL37P6-201ENST00000460682 294 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 BET1P1-201ENST00000482276 359 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN4AP35499 Y_RNA.675-201ENST00000516389 149 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 RNU6-678P-201ENST00000516832 109 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 MTND4LP18-201ENST00000526864 291 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 CYCSP26-201ENST00000534107 320 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC1.66□□□□□ -2.14
SCN4AP35499 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC1.66□□□□□ -2.14
SCN4AP35499 RPL21P5-201ENST00000554662 472 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN4AP35499 FAM106DP-201ENST00000586416 501 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.66□□□□□ -2.14
SCN4AP35499 DUSP12P1-201ENST00000612874 516 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 AC004852.3-201ENST00000614131 326 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 AC009090.3-201ENST00000616553 565 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
SCN4AP35499 Y_RNA.46-201ENST00000362695 102 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 RNU6-108P-201ENST00000365558 107 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 AC074117.2-201ENST00000417130 397 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 PIGFP2-201ENST00000421400 651 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.66□□□□□ -2.14
SCN4AP35499 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC1.66□□□□□ -2.14
SCN4AP35499 AC244035.3-201ENST00000428399 271 ntTSL 2 BASIC1.66□□□□□ -2.14
SCN4AP35499 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN4AP35499 AL627311.1-201ENST00000431514 115 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 RPL23AP30-201ENST00000432419 501 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC1.66□□□□□ -2.14
SCN4AP35499 SNRPGP13-201ENST00000442212 177 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 AC117386.2-202ENST00000472821 522 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN4AP35499 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN4AP35499 RNU6-927P-201ENST00000516199 100 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 RNU6-928P-201ENST00000516876 104 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 AC090572.1-201ENST00000519251 160 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC1.66□□□□□ -2.14
SCN4AP35499 MRPL42-204ENST00000548545 692 ntAPPRIS ALT1 TSL 2 BASIC1.66□□□□□ -2.14
SCN4AP35499 AC021739.1-201ENST00000559631 174 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 AC012065.4-201ENST00000602445 679 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 U73023.1-201ENST00000603134 700 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 AC008121.1-201ENST00000603244 268 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 AL022154.1-201ENST00000604698 785 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC1.66□□□□□ -2.14
SCN4AP35499 AC063944.3-201ENST00000609969 533 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC1.66□□□□□ -2.14
SCN4AP35499 AC083806.3-201ENST00000614016 455 ntBASIC1.66□□□□□ -2.14
SCN4AP35499 RNU6-898P-201ENST00000365627 104 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 RNU6-166P-201ENST00000384371 107 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 MIR558-201ENST00000384920 94 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 RPL23AP32-201ENST00000395315 459 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 AL031577.2-201ENST00000404133 280 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 RN7SKP51-201ENST00000410781 304 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 POLR2J4-204ENST00000418424 324 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 AL590383.1-201ENST00000428602 75 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC1.65□□□□□ -2.15
SCN4AP35499 MTND1P28-201ENST00000435623 950 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 AL445687.1-201ENST00000439946 251 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC1.65□□□□□ -2.15
SCN4AP35499 AC012308.1-201ENST00000451232 178 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 MTCYBP18-201ENST00000501056 747 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC1.65□□□□□ -2.15
SCN4AP35499 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC1.65□□□□□ -2.15
SCN4AP35499 RNU6-1092P-201ENST00000516955 87 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 LINC00944-203ENST00000542248 548 ntTSL 4 BASIC1.65□□□□□ -2.15
SCN4AP35499 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.65□□□□□ -2.15
SCN4AP35499 ADI1P3-201ENST00000549509 470 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC1.65□□□□□ -2.15
SCN4AP35499 AC090616.5-201ENST00000581225 299 ntTSL 5 BASIC1.65□□□□□ -2.15
SCN4AP35499 MTCYBP22-201ENST00000603788 447 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 RNU6-91P-201ENST00000607774 107 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 AC091304.6-201ENST00000619761 202 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1.65□□□□□ -2.15
SCN4AP35499 AL359854.1-201ENST00000614203 1594 ntBASIC1.65□□□□□ -2.15
SCN4AP35499 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
SCN4AP35499 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.64□□□□□ -2.15
SCN4AP35499 MT-TH-201ENST00000387441 69 ntBASIC1.64□□□□□ -2.15
SCN4AP35499 U8.14-201ENST00000390843 143 ntBASIC1.64□□□□□ -2.15
SCN4AP35499 RNU6-750P-201ENST00000390946 107 ntBASIC1.64□□□□□ -2.15
SCN4AP35499 SNORA46.1-201ENST00000391069 153 ntBASIC1.64□□□□□ -2.15
SCN4AP35499 FTH1P15-201ENST00000406984 280 ntBASIC1.64□□□□□ -2.15
SCN4AP35499 AC007283.2-201ENST00000424739 197 ntBASIC1.64□□□□□ -2.15
SCN4AP35499 AC092447.3-201ENST00000426027 686 ntBASIC1.64□□□□□ -2.15
SCN4AP35499 LINC01724-201ENST00000430519 621 ntTSL 3 BASIC1.64□□□□□ -2.15
SCN4AP35499 HTR2A-AS1-201ENST00000430913 429 ntTSL 3 BASIC1.64□□□□□ -2.15
SCN4AP35499 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 181.7 ms