Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC097372.5-201ENST00000623665 376 ntBASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 MFSD8-236ENST00000641509 4050 ntBASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 MTND5P9-201ENST00000503854 1755 ntBASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC006971.1-201ENST00000407916 4486 ntBASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 MFSD8-242ENST00000641690 4199 ntBASIC5.41□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 SNORD113-8-201ENST00000363497 74 ntBASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNU6-371P-201ENST00000364283 108 ntBASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 Y_RNA.292-201ENST00000364904 97 ntBASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNU6-290P-201ENST00000365212 101 ntBASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 Y_RNA.418-201ENST00000384029 102 ntBASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNU4-78P-201ENST00000410940 126 ntBASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 HSPE1P12-201ENST00000412576 301 ntBASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC087650.1-201ENST00000431445 468 ntBASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC234775.1-201ENST00000454247 670 ntBASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNU6-953P-201ENST00000459154 107 ntBASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RN7SL585P-201ENST00000470538 280 ntBASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC109927.1-202ENST00000511951 282 ntTSL 3 BASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 RNU6-27P-201ENST00000516146 107 ntBASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC021979.1-201ENST00000553822 336 ntTSL 3 BASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC015813.2-201ENST00000578794 711 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC067852.3-201ENST00000589177 561 ntBASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 AC108706.1-201ENST00000611053 297 ntBASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 CENPF-206ENST00000614578 528 ntTSL 5 BASIC5.4□□□□□ -1.54
SENP3-EIF4A1A0A087X0R7 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC5.4□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 BX322639.1-202ENST00000423987 2213 ntBASIC5.4□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 MAPK10-320ENST00000641462 6696 ntBASIC5.4□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC090740.1-201ENST00000623193 2262 ntBASIC5.4□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC5.4□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 Y_RNA.343-201ENST00000365354 112 ntBASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 MTCYBP2-201ENST00000407745 171 ntBASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 GNG5P5-201ENST00000420444 220 ntBASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 TTTY20-201ENST00000434487 259 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RNU6-496P-201ENST00000516145 99 ntBASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 IGHVII-62-1-201ENST00000519283 235 ntBASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AL162424.1-201ENST00000602325 221 ntBASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC098826.3-201ENST00000603823 466 ntBASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC006329.2-201ENST00000611491 394 ntBASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 MIR7975-201ENST00000619350 68 ntBASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 SNORD39.4-201ENST00000620099 78 ntBASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 OR1A1-202ENST00000641322 3743 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 GPR34-202ENST00000378142 1928 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 SDAD1P2-201ENST00000441308 2028 ntBASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC006504.1-201ENST00000562493 3666 ntBASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RNY3P4-201ENST00000384428 101 ntBASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 U3.39-201ENST00000408569 239 ntBASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RNA5SP494-201ENST00000410653 129 ntBASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 MTCO1P5-201ENST00000433573 344 ntBASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AP000936.3-201ENST00000438127 255 ntBASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AL451050.1-201ENST00000450126 415 ntBASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RNU6-390P-201ENST00000516259 103 ntBASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AL133166.1-202ENST00000550975 565 ntTSL 4 BASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC006077.1-201ENST00000604746 343 ntBASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 MIR6868-201ENST00000611215 58 ntBASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 MIR6864-201ENST00000617935 70 ntBASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AP5M1-201ENST00000261558 11737 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 SAGE4P-201ENST00000442271 3381 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 AC125257.1-201ENST00000560400 2930 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RNU4-90P-201ENST00000362773 141 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 MIR92A2-201ENST00000385299 75 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 MIR1179-201ENST00000408703 91 ntBASIC5.37□□□□□ -1.55
SENP3-EIF4A1A0A087X0R7 RPS29P4-201ENST00000414733 161 ntBASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 254.5 ms