Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC61Q9Y6R9 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC61Q9Y6R9 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC61Q9Y6R9 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC61Q9Y6R9 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
CCDC61Q9Y6R9 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC6.71□□□□□ -1.34
CCDC61Q9Y6R9 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 TRPM6-202ENST00000360774 8425 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 RNU6-1131P-201ENST00000364955 107 ntBASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 SNORD72-201ENST00000390994 80 ntBASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 RNU6-882P-201ENST00000391025 103 ntBASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 GPS2P1-201ENST00000411761 986 ntBASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 snoU109.6-201ENST00000516831 118 ntBASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 SNORA31.19-201ENST00000517079 126 ntBASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 FTH1P11-201ENST00000517577 551 ntBASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 CENPCP1-201ENST00000533085 2578 ntBASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
CCDC61Q9Y6R9 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 SNORD114-19-201ENST00000363072 75 ntBASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 SNORA70.2-201ENST00000364506 135 ntBASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 Y_RNA.348-201ENST00000365403 103 ntBASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 RNU6-969P-201ENST00000383900 105 ntBASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 MIR129-1-201ENST00000384972 72 ntBASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 TRAV7-201ENST00000390429 337 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 AL592291.1-201ENST00000403830 352 ntBASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 snoU109.2-201ENST00000459316 135 ntBASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 AC010329.5-201ENST00000623497 2174 ntBASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
CCDC61Q9Y6R9 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 Z95114.1-201ENST00000624264 14574 ntBASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 RNU6-640P-201ENST00000363693 105 ntBASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 RNU6-873P-201ENST00000363833 107 ntBASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 MIR487A-201ENST00000385009 80 ntBASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 U3.19-201ENST00000390893 196 ntBASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 RNU6-1228P-201ENST00000391014 107 ntBASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 SNORA26.5-201ENST00000391215 123 ntBASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 MIR888-201ENST00000401186 77 ntBASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 RPS4XP13-201ENST00000483219 789 ntBASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 snoMBII-202.2-201ENST00000517263 86 ntBASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 AL121932.1-201ENST00000605542 214 ntBASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 AC027309.3-201ENST00000623419 351 ntBASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 MIR4496-201ENST00000635896 61 ntBASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.68□□□□□ -1.34
CCDC61Q9Y6R9 TM4SF20-201ENST00000304568 2296 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC61Q9Y6R9 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6.67□□□□□ -1.34
CCDC61Q9Y6R9 SMG1P6-201ENST00000532337 2930 ntBASIC6.67□□□□□ -1.34
CCDC61Q9Y6R9 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC6.67□□□□□ -1.34
CCDC61Q9Y6R9 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC61Q9Y6R9 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC6.67□□□□□ -1.34
CCDC61Q9Y6R9 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC6.67□□□□□ -1.34
CCDC61Q9Y6R9 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC61Q9Y6R9 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC6.67□□□□□ -1.34
CCDC61Q9Y6R9 SNORA73.1-201ENST00000363107 205 ntBASIC6.67□□□□□ -1.34
CCDC61Q9Y6R9 RNU6-324P-201ENST00000363957 106 ntBASIC6.67□□□□□ -1.34
CCDC61Q9Y6R9 Y_RNA.280-201ENST00000364765 112 ntBASIC6.67□□□□□ -1.34
CCDC61Q9Y6R9 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC61Q9Y6R9 RNU6-166P-201ENST00000384371 107 ntBASIC6.67□□□□□ -1.34
CCDC61Q9Y6R9 AL355497.1-201ENST00000406262 551 ntBASIC6.67□□□□□ -1.34
CCDC61Q9Y6R9 RNU6-712P-201ENST00000410558 100 ntBASIC6.67□□□□□ -1.34
CCDC61Q9Y6R9 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 241.4 ms