Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 AC068647.1-201ENST00000489539 2265 ntBASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 RNU4-10P-201ENST00000364383 140 ntBASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 SNORA70F-201ENST00000384142 135 ntBASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 U8.10-201ENST00000384260 133 ntBASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 RPL18P10-201ENST00000425606 538 ntBASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 EIF4A1P11-201ENST00000451239 222 ntBASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 Y_RNA.685-201ENST00000516532 108 ntBASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 RNU6-453P-201ENST00000516819 85 ntBASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 AC027369.5-201ENST00000533838 755 ntBASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 AC010999.1-201ENST00000611856 324 ntBASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 AL391903.3-201ENST00000612158 163 ntBASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 AL391261.4-201ENST00000616012 481 ntBASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 AC091932.3-201ENST00000624223 323 ntBASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC6.78□□□□□ -1.32
CCDC61Q9Y6R9 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.32
CCDC61Q9Y6R9 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 FAT4-202ENST00000394329 16123 ntAPPRIS P1 TSL 5 BASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 RNU6-78P-201ENST00000362897 107 ntBASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 RNU5F-3P-201ENST00000363767 117 ntBASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 CRP-203ENST00000368111 512 ntTSL 3 BASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 RNU6-142P-201ENST00000384019 107 ntBASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 SNORA29-201ENST00000384183 140 ntBASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 RNU6-905P-201ENST00000384434 107 ntBASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 U3.30-201ENST00000391308 210 ntBASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 RNU6-1199P-201ENST00000411249 104 ntBASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 RPL21P66-201ENST00000426566 466 ntBASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 BX276092.6-201ENST00000430476 250 ntBASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 ATP6V0E1P2-201ENST00000441771 245 ntBASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 BX276092.8-201ENST00000455722 250 ntBASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 RNU6-1061P-201ENST00000516530 99 ntBASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 AC090142.3-201ENST00000519012 385 ntBASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 RN7SL290P-201ENST00000578661 300 ntBASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 MIR4284-201ENST00000578924 81 ntBASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 AL138820.1-201ENST00000617901 5305 ntBASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 AC092070.2-203ENST00000598377 3644 ntBASIC6.77□□□□□ -1.33
CCDC61Q9Y6R9 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 RNU6-105P-201ENST00000363909 104 ntBASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 AC068538.1-201ENST00000376856 336 ntBASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 RNU6-1310P-201ENST00000384153 107 ntBASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 Y_RNA.498-201ENST00000384460 102 ntBASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 MIR1250-201ENST00000408098 113 ntBASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 RNA5SP56-201ENST00000410277 118 ntBASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 RNU2-54P-201ENST00000410299 190 ntBASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 RNA5SP44-201ENST00000410446 133 ntBASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 AC138623.1-201ENST00000418060 216 ntBASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 AL589765.3-201ENST00000446084 462 ntBASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 AC000111.2-201ENST00000448200 210 ntBASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 SCARNA8-201ENST00000515924 131 ntBASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 AC018448.1-201ENST00000552843 316 ntBASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 AC004832.5-201ENST00000608677 401 ntBASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 MIR6758-201ENST00000620653 63 ntBASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 MIR1245B-201ENST00000636115 69 ntBASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
CCDC61Q9Y6R9 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC6.75□□□□□ -1.33
CCDC61Q9Y6R9 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC61Q9Y6R9 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
CCDC61Q9Y6R9 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC6.75□□□□□ -1.33
CCDC61Q9Y6R9 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
CCDC61Q9Y6R9 Y_RNA.24-201ENST00000362508 103 ntBASIC6.75□□□□□ -1.33
CCDC61Q9Y6R9 SNORA36C-201ENST00000384289 132 ntBASIC6.75□□□□□ -1.33
CCDC61Q9Y6R9 AL357515.1-201ENST00000402967 542 ntBASIC6.75□□□□□ -1.33
CCDC61Q9Y6R9 U3.32-201ENST00000408116 212 ntBASIC6.75□□□□□ -1.33
CCDC61Q9Y6R9 RPS27AP12-201ENST00000429552 465 ntBASIC6.75□□□□□ -1.33
CCDC61Q9Y6R9 AL691482.1-201ENST00000453255 87 ntBASIC6.75□□□□□ -1.33
CCDC61Q9Y6R9 RNU6ATAC28P-201ENST00000459249 118 ntBASIC6.75□□□□□ -1.33
CCDC61Q9Y6R9 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC6.75□□□□□ -1.33
CCDC61Q9Y6R9 Y_RNA.692-201ENST00000516627 105 ntBASIC6.75□□□□□ -1.33
CCDC61Q9Y6R9 RN7SKP277-201ENST00000516895 283 ntBASIC6.75□□□□□ -1.33
CCDC61Q9Y6R9 MIR4675-201ENST00000577898 77 ntBASIC6.75□□□□□ -1.33
CCDC61Q9Y6R9 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC6.75□□□□□ -1.33
CCDC61Q9Y6R9 AC025521.1-201ENST00000621624 286 ntBASIC6.75□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 195.9 ms