Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ENSAP3-201ENST00000312710 333 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AL589826.1-201ENST00000340697 249 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 RNU6-77P-201ENST00000410554 91 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AC093422.3-201ENST00000428506 305 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 OR51AB1P-201ENST00000429046 620 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 HMGB1P12-201ENST00000438594 598 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 LINC00440-201ENST00000446579 734 ntTSL 5 BASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 HMGN2P21-201ENST00000447764 270 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AL590664.1-201ENST00000448065 339 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AC078918.1-201ENST00000498515 228 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 SRP72-202ENST00000504757 745 ntTSL 2 BASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AC104115.2-201ENST00000523026 687 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AC026616.1-201ENST00000523157 525 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 LINC00557-201ENST00000563184 1279 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 AC245427.3-201ENST00000632041 51 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.31□□□□□ -2.04
SHANK3Q9BYB0 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 MTCO1P4-201ENST00000520516 1409 ntBASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 SPAM1-205ENST00000439500 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 RNU6-650P-201ENST00000365658 111 ntBASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 ARL2BPP3-201ENST00000421226 480 ntBASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 HMGN1P33-201ENST00000432945 451 ntBASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 RPS26P56-201ENST00000444468 240 ntBASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 AL021397.1-201ENST00000451806 248 ntBASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 RPL21P39-201ENST00000463605 483 ntBASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 AC011979.1-201ENST00000472300 483 ntBASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 RPL21P93-201ENST00000480465 489 ntBASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 AC233702.1-201ENST00000482905 502 ntBASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 AC093591.1-201ENST00000491435 481 ntBASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 AC090453.1-201ENST00000495560 436 ntBASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 SNRPGP15-201ENST00000600149 222 ntBASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 AL355812.1-201ENST00000603215 216 ntBASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 AL009028.1-201ENST00000604895 802 ntBASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 U73479.1-201ENST00000618062 168 ntBASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 MTND4P21-201ENST00000453886 1357 ntBASIC2.3□□□□□ -2.04
SHANK3Q9BYB0 MTND5P11-201ENST00000511037 1812 ntBASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 MIR96-201ENST00000362288 78 ntBASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 RNU6-1151P-201ENST00000384684 107 ntBASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 SFR1P1-201ENST00000403720 688 ntBASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 AC002542.1-201ENST00000440683 193 ntBASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 USP9YP15-201ENST00000442391 422 ntBASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 AL034418.1-201ENST00000448675 860 ntBASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 HMGN3P1-201ENST00000453847 193 ntBASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 TPRKBP1-201ENST00000456243 481 ntBASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 AL138787.2-202ENST00000479395 385 ntTSL 2 BASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 AC109486.1-201ENST00000486833 374 ntBASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 AC090616.5-202ENST00000582111 297 ntBASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 VN1R88P-201ENST00000596787 292 ntBASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 AL590426.2-201ENST00000607287 786 ntTSL 3 BASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 AC018926.3-201ENST00000618841 406 ntBASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 AC068620.4-201ENST00000636730 1182 ntBASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 MTCO1P6-201ENST00000481192 1384 ntBASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 CPXCR1-203ENST00000614120 1485 ntAPPRIS P1 TSL 3 BASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.29□□□□□ -2.04
SHANK3Q9BYB0 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
SHANK3Q9BYB0 RNU1-101P-201ENST00000391171 127 ntBASIC2.28□□□□□ -2.04
SHANK3Q9BYB0 RNU6-272P-201ENST00000411028 104 ntBASIC2.28□□□□□ -2.04
SHANK3Q9BYB0 RNU2-71P-201ENST00000411395 189 ntBASIC2.28□□□□□ -2.04
SHANK3Q9BYB0 AC241520.1-201ENST00000422654 1099 ntBASIC2.28□□□□□ -2.04
SHANK3Q9BYB0 RPS7P2-201ENST00000435134 607 ntBASIC2.28□□□□□ -2.04
SHANK3Q9BYB0 MTND2P3-201ENST00000452458 470 ntBASIC2.28□□□□□ -2.04
SHANK3Q9BYB0 USP9YP10-201ENST00000454868 628 ntBASIC2.28□□□□□ -2.04
SHANK3Q9BYB0 AC108734.3-201ENST00000481241 1165 ntBASIC2.28□□□□□ -2.04
SHANK3Q9BYB0 MTCYBP37-201ENST00000510642 1133 ntBASIC2.28□□□□□ -2.04
SHANK3Q9BYB0 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
SHANK3Q9BYB0 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC2.28□□□□□ -2.04
SHANK3Q9BYB0 FRG1HP-204ENST00000617940 757 ntBASIC2.28□□□□□ -2.04
SHANK3Q9BYB0 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC2.28□□□□□ -2.04
SHANK3Q9BYB0 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.28□□□□□ -2.04
SHANK3Q9BYB0 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC2.28□□□□□ -2.04
SHANK3Q9BYB0 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
SHANK3Q9BYB0 RNU6-1027P-201ENST00000383998 107 ntBASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 RNU6-1293P-201ENST00000384077 107 ntBASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 MIR598-201ENST00000384868 97 ntBASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 SSXP9-201ENST00000417503 292 ntBASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 RPS15AP40-201ENST00000419621 391 ntBASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 HIGD1AP11-201ENST00000438361 280 ntBASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 AL589963.1-201ENST00000449282 727 ntTSL 3 BASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 SOX2-OT-207ENST00000476964 606 ntTSL 1 (best) BASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 AC104057.1-201ENST00000515547 497 ntBASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 RNA5SP61-201ENST00000516453 100 ntBASIC2.28□□□□□ -2.05
SHANK3Q9BYB0 RPL21P5-201ENST00000554662 472 ntBASIC2.28□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 252.1 ms