Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 SCARNA4.1-201ENST00000628597 123 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC091812.1-201ENST00000432235 1948 ntBASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC6.18□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 MIR7-3-201ENST00000384898 110 ntBASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL590135.1-201ENST00000422215 156 ntBASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL034379.1-201ENST00000423216 253 ntBASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL606753.1-201ENST00000427435 87 ntBASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL132765.1-201ENST00000434165 553 ntBASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL035551.1-201ENST00000446931 348 ntBASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 HMGB3P30-201ENST00000457863 606 ntBASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RNU6-488P-201ENST00000515918 99 ntBASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC022884.3-201ENST00000579571 248 ntBASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC092747.3-201ENST00000603769 301 ntBASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC009229.3-201ENST00000608056 282 ntBASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 ATP5A1P2-202ENST00000616464 443 ntBASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC103858.2-201ENST00000621471 543 ntBASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL121950.1-201ENST00000624993 2077 ntBASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC6.17□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RMST-202ENST00000541282 2099 ntTSL 2 BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 NEAT1-202ENST00000501122 22743 ntBASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 TMEM27-201ENST00000380342 1578 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RNU6-774P-201ENST00000363238 107 ntBASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 Y_RNA.478-201ENST00000384358 107 ntBASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RNU2-6P-201ENST00000411404 190 ntBASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 POLHP1-201ENST00000411806 470 ntBASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL109947.1-201ENST00000423747 382 ntTSL 2 BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 CEP57L1P1-201ENST00000430943 1201 ntBASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC005008.1-201ENST00000456151 612 ntBASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC011005.2-201ENST00000487324 359 ntBASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC055855.1-201ENST00000489563 579 ntBASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RNU6-202P-201ENST00000515998 96 ntBASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC022868.1-201ENST00000517767 391 ntBASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 OR5D17P-201ENST00000531492 978 ntBASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL137161.1-201ENST00000532231 390 ntBASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 SNORD39.3-201ENST00000584451 71 ntBASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 Z98751.3-201ENST00000604447 521 ntBASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 MIR8069-1-201ENST00000616627 86 ntBASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 MIR8069-2-201ENST00000621412 86 ntBASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 PICALM-209ENST00000528398 2049 ntTSL 2 BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC6.16□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 SPATA31D2P-201ENST00000429999 4388 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC021146.4-201ENST00000309229 279 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 Y_RNA.39-201ENST00000362620 98 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RNA5SP151-201ENST00000365632 117 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 MIR1252-201ENST00000408861 65 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RNU6-1050P-201ENST00000410388 107 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RNU2-23P-201ENST00000410545 195 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RN7SKP222-201ENST00000410651 315 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RNU2-38P-201ENST00000410856 79 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC114755.2-201ENST00000413520 361 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RPS15AP10-201ENST00000432472 382 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC092013.1-201ENST00000438795 332 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC112492.4-201ENST00000456549 352 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 PRELID3BP1-201ENST00000457142 540 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC079804.1-201ENST00000461922 436 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 UBA52P3-201ENST00000491303 382 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 MTND1P19-201ENST00000511780 315 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 IGKV2-36-201ENST00000519999 223 ntBASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC068880.2-201ENST00000521016 362 ntTSL 5 BASIC6.15□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC135001.1-201ENST00000544546 283 ntBASIC6.15□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 228.9 ms