Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC078899.3-201ENST00000599065 212 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AL121992.2-201ENST00000606262 256 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC091903.1-201ENST00000624322 454 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AL732372.2-225ENST00000642124 456 ntBASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 USP45-204ENST00000369233 2514 ntTSL 5 BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 CASC19-204ENST00000641001 2055 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC004944.1-201ENST00000517807 3059 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC107068.1-201ENST00000563286 4218 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 OR51H2P-202ENST00000641424 3046 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 Y_RNA.180-201ENST00000363867 113 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 RNU6-82P-201ENST00000363970 107 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 SNORA62.1-201ENST00000364287 154 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 Y_RNA.785-201ENST00000384290 109 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 RN7SKP167-201ENST00000411047 285 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MTCO3P19-201ENST00000415864 321 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC048351.1-201ENST00000420064 602 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AL590664.1-201ENST00000448065 339 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 HMGN3P1-201ENST00000453847 193 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 RNU6-138P-201ENST00000515952 107 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 RNU6-470P-201ENST00000515954 104 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC131281.1-201ENST00000522984 164 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC022616.4-201ENST00000522985 181 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MIR4775-201ENST00000581168 75 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MIR3138-201ENST00000585238 82 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC125232.2-201ENST00000592457 143 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC007179.3-201ENST00000604976 235 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 LINC00310-205ENST00000609062 863 ntTSL 5 BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC096772.1-201ENST00000609146 564 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MIR6128-201ENST00000615528 109 ntBASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC097478.4-201ENST00000615968 522 ntTSL 5 BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MPP6-209ENST00000625307 126 ntTSL 5 BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC6.22□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 IGSF11-AS1-201ENST00000477009 1604 ntTSL 2 BASIC6.21□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AL391684.1-202ENST00000641293 1636 ntBASIC6.21□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 AC106871.1-201ENST00000568324 3102 ntBASIC6.21□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
SENP3-EIF4A1A0A087X0R7 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 Y_RNA.22-201ENST00000362492 102 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RNU6-343P-201ENST00000364709 104 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 Y_RNA.424-201ENST00000384063 103 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 MIR558-201ENST00000384920 94 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 EIF4E2P1-201ENST00000393781 255 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL445529.1-201ENST00000398713 389 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 MIR1302-6-201ENST00000408466 90 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 Z92545.1-201ENST00000411782 234 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL136368.1-201ENST00000416249 401 ntTSL 2 BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 ANAPC1P1-201ENST00000426186 2145 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC073069.1-201ENST00000428657 441 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RPL21P91-201ENST00000429231 479 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RPL37P1-201ENST00000432310 284 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC005154.2-201ENST00000438110 379 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 NUTF2P3-201ENST00000448540 384 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 Y_RNA.700-201ENST00000516806 100 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 Y_RNA.708-201ENST00000516950 96 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 RNA5SP503-201ENST00000517047 117 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AC015912.2-201ENST00000571053 181 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 MIR4703-201ENST00000577728 79 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 uc_338.12-201ENST00000616344 181 ntBASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC6.21□□□□□ -1.42
SENP3-EIF4A1A0A087X0R7 U6.104-201ENST00000637979 90 ntBASIC6.21□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 201.8 ms