Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 RPL37P4-201ENST00000448908 268 ntBASIC4.23□□□□□ -1.73
SHANK3Q9BYB0 RPS20P32-201ENST00000456044 356 ntBASIC4.23□□□□□ -1.73
SHANK3Q9BYB0 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.23□□□□□ -1.73
SHANK3Q9BYB0 AL359237.1-201ENST00000554305 826 ntTSL 5 BASIC4.23□□□□□ -1.73
SHANK3Q9BYB0 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC4.23□□□□□ -1.73
SHANK3Q9BYB0 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.23□□□□□ -1.73
SHANK3Q9BYB0 AL162713.1-201ENST00000604480 262 ntBASIC4.23□□□□□ -1.73
SHANK3Q9BYB0 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC4.23□□□□□ -1.73
SHANK3Q9BYB0 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC4.23□□□□□ -1.73
SHANK3Q9BYB0 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC4.23□□□□□ -1.73
SHANK3Q9BYB0 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
SHANK3Q9BYB0 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC4.23□□□□□ -1.73
SHANK3Q9BYB0 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.22□□□□□ -1.73
SHANK3Q9BYB0 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
SHANK3Q9BYB0 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.22□□□□□ -1.73
SHANK3Q9BYB0 AL365361.1-201ENST00000566942 3481 ntBASIC4.22□□□□□ -1.73
SHANK3Q9BYB0 HMGN2P8-201ENST00000391458 268 ntBASIC4.22□□□□□ -1.73
SHANK3Q9BYB0 KRTAP19-11P-201ENST00000439851 104 ntBASIC4.22□□□□□ -1.73
SHANK3Q9BYB0 AL357552.1-201ENST00000445254 415 ntBASIC4.22□□□□□ -1.73
SHANK3Q9BYB0 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC4.22□□□□□ -1.73
SHANK3Q9BYB0 RPL23AP71-201ENST00000470966 469 ntBASIC4.22□□□□□ -1.73
SHANK3Q9BYB0 RPS17P11-201ENST00000474297 293 ntBASIC4.22□□□□□ -1.73
SHANK3Q9BYB0 AC068724.1-201ENST00000487100 792 ntBASIC4.22□□□□□ -1.73
SHANK3Q9BYB0 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC4.22□□□□□ -1.73
SHANK3Q9BYB0 AC009237.17-201ENST00000618111 748 ntBASIC4.22□□□□□ -1.73
SHANK3Q9BYB0 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
SHANK3Q9BYB0 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
SHANK3Q9BYB0 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.22□□□□□ -1.73
SHANK3Q9BYB0 TAS2R30-201ENST00000539585 1687 ntAPPRIS P1 BASIC4.21□□□□□ -1.73
SHANK3Q9BYB0 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
SHANK3Q9BYB0 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4.21□□□□□ -1.73
SHANK3Q9BYB0 AL691426.1-201ENST00000416507 509 ntTSL 2 BASIC4.21□□□□□ -1.73
SHANK3Q9BYB0 TOMM20P4-201ENST00000427861 435 ntBASIC4.21□□□□□ -1.73
SHANK3Q9BYB0 FTLP19-201ENST00000433300 394 ntBASIC4.21□□□□□ -1.73
SHANK3Q9BYB0 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC4.21□□□□□ -1.73
SHANK3Q9BYB0 AC099063.2-201ENST00000446360 662 ntBASIC4.21□□□□□ -1.73
SHANK3Q9BYB0 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC4.21□□□□□ -1.73
SHANK3Q9BYB0 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC4.21□□□□□ -1.73
SHANK3Q9BYB0 AC113430.1-201ENST00000506872 718 ntBASIC4.21□□□□□ -1.73
SHANK3Q9BYB0 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.21□□□□□ -1.73
SHANK3Q9BYB0 MIR4319-201ENST00000577285 85 ntBASIC4.21□□□□□ -1.73
SHANK3Q9BYB0 MIR4425-201ENST00000580572 84 ntBASIC4.21□□□□□ -1.73
SHANK3Q9BYB0 BNIP3P38-201ENST00000601117 544 ntBASIC4.21□□□□□ -1.73
SHANK3Q9BYB0 AC015813.4-201ENST00000610469 179 ntBASIC4.21□□□□□ -1.73
SHANK3Q9BYB0 AL353684.1-201ENST00000622677 1120 ntBASIC4.21□□□□□ -1.73
SHANK3Q9BYB0 CASC1-202ENST00000354189 2445 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 AL672296.1-201ENST00000427780 2158 ntBASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 OR5J1P-201ENST00000313544 939 ntBASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 MIR504-201ENST00000385065 83 ntBASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 RNA5SP104-201ENST00000410989 118 ntBASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 AL139281.1-201ENST00000422120 335 ntBASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 AC073508.1-201ENST00000428866 656 ntBASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 HMGB1P5-202ENST00000451497 985 ntBASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 AL136097.1-201ENST00000456945 913 ntBASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 AL512310.1-201ENST00000548639 172 ntBASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 AL355922.5-201ENST00000553534 351 ntTSL 3 BASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 AL096803.3-201ENST00000609032 532 ntBASIC4.21□□□□□ -1.74
SHANK3Q9BYB0 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 AL136116.1-201ENST00000403591 381 ntBASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 AL391417.1-201ENST00000404100 426 ntBASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 EEF1A1P41-201ENST00000414667 207 ntBASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 NUP35P1-201ENST00000422734 947 ntBASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 HNRNPKP5-201ENST00000515300 253 ntBASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 AC007673.1-201ENST00000590604 1100 ntTSL 5 BASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 AC231759.1-201ENST00000616455 597 ntBASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 LINC02471-203ENST00000641941 4752 ntBASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.2□□□□□ -1.74
SHANK3Q9BYB0 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC4.19□□□□□ -1.74
SHANK3Q9BYB0 ELAVL2-204ENST00000397312 3805 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
SHANK3Q9BYB0 CR381670.1-201ENST00000624291 1693 ntBASIC4.19□□□□□ -1.74
SHANK3Q9BYB0 Y_RNA.238-201ENST00000364441 102 ntBASIC4.19□□□□□ -1.74
SHANK3Q9BYB0 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC4.19□□□□□ -1.74
SHANK3Q9BYB0 MIR887-201ENST00000401258 79 ntBASIC4.19□□□□□ -1.74
SHANK3Q9BYB0 AC073174.1-201ENST00000444155 415 ntTSL 5 BASIC4.19□□□□□ -1.74
SHANK3Q9BYB0 RN7SL93P-201ENST00000463035 293 ntBASIC4.19□□□□□ -1.74
SHANK3Q9BYB0 AC093722.1-201ENST00000504882 489 ntTSL 3 BASIC4.19□□□□□ -1.74
SHANK3Q9BYB0 LINC02283-201ENST00000511634 474 ntTSL 3 BASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 162.6 ms